Evidence map›Paper›PMID 29674676›Full record

ArticleScientific reports2018

Comparative High-Resolution Transcriptome Sequencing of Lymphoma Cell Lines and de novo Lymphomas Reveals Cell-Line-Specific Pathway Dysregulation.

Leila Taher, Julia Beck, Wen Liu, Catrin Roolf, Jan T Soller, Barbara C Rütgen, Sabine E Hammer, Murali Chodisetti, Sina Sender, Katharina A Sterenczak and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Leila TaherBioinformatics, Department of Biology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
Julia BeckChronix Biomedical Göttingen, Göttingen, Germany.
Wen LiuDivision of Medicine, Hematology, Oncology and Palliative Medicine, University of Rostock, Rostock, Germany.
Catrin RoolfDivision of Medicine, Hematology, Oncology and Palliative Medicine, University of Rostock, Rostock, Germany.
Jan T SollerInstitute of Veterinary Medicine, University of Goettingen, Göttingen, Germany.
Barbara C RütgenClinical Pathology, Department of Pathobiology, University of Veterinary Medicine Vienna, Vienna, Austria.
Sabine E HammerInstitute of Immunology, Department of Pathobiology, University of Veterinary Medicine Vienna, Vienna, Austria.ORCID 0000-0003-1475-3938
Murali ChodisettiInstitute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany.
Sina SenderDivision of Medicine, Hematology, Oncology and Palliative Medicine, University of Rostock, Rostock, Germany.
Katharina A SterenczakDivision of Medicine, Hematology, Oncology and Palliative Medicine, University of Rostock, Rostock, Germany.
Georg FuellenInstitute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany.
Christian JunghanssDivision of Medicine, Hematology, Oncology and Palliative Medicine, University of Rostock, Rostock, Germany.
Bertram BrenigInstitute of Veterinary Medicine, University of Goettingen, Göttingen, Germany.
Ingo NolteSmall Animal Clinic, University of Veterinary Medicine Hannover, Hannover, Germany.
Ekkehard SchützChronix Biomedical Göttingen, Göttingen, Germany.
Hugo Murua EscobarDivision of Medicine, Hematology, Oncology and Palliative Medicine, University of Rostock, Rostock, Germany. Hugo.Murua.Escobar@med.uni-rostock.de.
University of Rostock · DEUniversity of Göttingen · DEUniversity of Veterinary Medicine Hannover, Foundation · DEUniversity of Veterinary Medicine Vienna · ATFriedrich-Alexander-Universität Erlangen-Nürnberg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In dogs as well as humans, lymphoma is one of the most common hematopoietic malignancies. Furthermore, due to its characteristics, canine lymphoma is recognized as a clinically relevant in vivo model to study the corresponding human disease. Immortalized cell lines are widely used as in vitro models to evaluate novel therapeutic agents and characterize their molecular mechanisms. However, it is known that long-term cultivation leads to clonal selection, genetic instability, and loss of the initial heterogenic character, limiting the usefulness of cell lines as preclinical models. Herein, we present a systematic characterization and comparison of the transcriptomic landscape of canine primary B- and T-cell lymphomas, five lymphoid cell lines (CLBL-1, CLBL-1M, GL-1, CL-1, and OSW) and four non-neoplastic control samples. We found that lymphomas and cell lines exhibit a common "differentiation and proliferation signature". However, our analysis also showed that, independently of the cell of origin, the transcriptional signatures of lymphomas are more similar to each other than they are to those of cell lines. In particular, we observed that not all common therapeutic targets are similarly expressed between lymphomas and lymphoid cell lines, and provide evidence that different lymphoid cell-lines should be used to model distinct aspects of lymphoma dysregulation.

Indexed as

AnimalsCell DifferentiationCell Line, TumorCell ProliferationDisease Models, AnimalDog DiseasesDogsExome SequencingGene Expression Regulation, NeoplasticHumansLymphomaReceptors, Antigen, B-CellSignal TransductionTranscriptomeReceptors, Antigen, B-Cell

Identifiers

PMID29674676
PMCPMC5908872
OpenAlexW2800365069

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.