Evidence map›Paper›PMID 29673330›Full record

ArticleBMC genomics2018

Modular assembly of transposable element arrays by microsatellite targeting in the guayule and rice genomes.

José A Valdes Franco, Yi Wang, Naxin Huo, Grisel Ponciano, Howard A Colvin, Colleen M McMahan, Yong Q Gu, William R Belknap

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

José A Valdes FrancoUniversidad Autónoma de Nuevo León, Monterrey, NL, Mexico.
Yi WangUSDA-Agricultural Research Service, Western Regional Research Center, Albany, CA, USA.
Naxin HuoUSDA-Agricultural Research Service, Western Regional Research Center, Albany, CA, USA.
Grisel PoncianoUSDA-Agricultural Research Service, Western Regional Research Center, Albany, CA, USA.
Howard A ColvinCooper Tire & Rubber Company, Findlay, OH, USA.
Colleen M McMahanUSDA-Agricultural Research Service, Western Regional Research Center, Albany, CA, USA.
Yong Q GuUSDA-Agricultural Research Service, Western Regional Research Center, Albany, CA, USA. yong.gu@ars.usda.gov.
William R BelknapUSDA-Agricultural Research Service, Western Regional Research Center, Albany, CA, USA.
Agricultural Research Service · USWestern Regional Research Center · USCooper Tire & Rubber Company (United States) · USCornell University · US

Funding

National Institute of Food and Agriculture 2012-10006
6 · The paper itself

Abstract

backgroundGuayule (Parthenium argentatum A. Gray) is a rubber-producing desert shrub native to Mexico and the United States. Guayule represents an alternative to Hevea brasiliensis as a source for commercial natural rubber. The efficient application of modern molecular/genetic tools to guayule improvement requires characterization of its genome.

resultsThe 1.6 Gb guayule genome was sequenced, assembled and annotated. The final 1.5 Gb assembly, while fragmented (N

conclusionThe sequencing and assembly of the guayule genome provides a foundation for application of current crop improvement technologies to this plant. In addition, characterization of this genome revealed SaTar elements with distribution profiles unique among TEs. Satar targeting appears based on an alternative MULE recombination mechanism with the potential to impact gene evolution.

Indexed as

AsteraceaeBase SequenceDNA Transposable ElementsGenome, PlantGenomicsMicrosatellite RepeatsMolecular Sequence AnnotationOryzaDNA Transposable ElementsAnnotationAssemblyClass II transposable elementGenomeNatural rubberNon-autonomousTransposon

Identifiers

PMID29673330
PMCPMC5907723
OpenAlexW2803714552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.