Evidence map›Paper›PMID 29672864›Full record

ArticleThe Journal of pathology2018

Menin regulates the serine biosynthetic pathway in Ewing sarcoma.

Laurie K Svoboda, Selina Shiqing K Teh, Sudha Sud, Samuel Kerk, Aaron Zebolsky, Sydney Treichel, Dafydd Thomas, Christopher J Halbrook, Ho-Joon Lee, Daniel Kremer and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of pathology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Menin in Cancer.Genes · 2024
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 1 institution in 1 country.

Laurie K SvobodaDepartment of Pediatrics and Communicable Diseases, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Selina Shiqing K TehDepartment of Pediatrics and Communicable Diseases, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Sudha SudDepartment of Pediatrics and Communicable Diseases, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Samuel KerkDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Aaron ZebolskyDepartment of Pediatrics and Communicable Diseases, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Sydney TreichelDepartment of Pediatrics and Communicable Diseases, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Dafydd ThomasDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Christopher J HalbrookDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Ho-Joon LeeDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Daniel KremerDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Li ZhangDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Szymon KlossowskiDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Armand R BankheadDepartment of Biostatistics, University of Michigan School of Public Health, Ann Arbor, Michigan, USA.
Brian MagnusonDepartment of Biostatistics, University of Michigan School of Public Health, Ann Arbor, Michigan, USA.
Mats LjungmanDepartment of Radiation Oncology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Tomasz CierpickiDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Jolanta GrembeckaDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Costas A LyssiotisDepartment of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Elizabeth R LawlorDepartment of Pediatrics and Communicable Diseases, University of Michigan Medical School, Ann Arbor, Michigan, USA.ORCID 0000-0002-0003-4513
University of Michigan · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 1988 to 2026
$178.2M
Michigan Institute for Clinical and Health Research (MICHR)UL1TR002240 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUMENG, JULIE C, MASHOUR, GEORGE ALEXANDER · 2017 to 2022
$54.9M
Michigan Institute for Clinical and Health Research (MCHR)UL1TR000433 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MASHOUR, GEORGE ALEXANDER · 2012 to 2016
$49.9M
Tissue and Pathology ResourcesU54CA168512 · NCI · SARC · PI REINKE, DENISE · 2012 to 2016
$11.0M
Statistics and Bioinformatics Core - WangU24DK097153 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BURANT, CHARLES F · 2012 to 2017
$10.1M
Training Program in Tumor MicroenvironmentT32CA009676 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Maria G Castro, Analisa Virginia DiFeo · 1992 to 2026
$7.3M
University of Michigan Postbaccalaureate Research Education Program (UM PREP)R25GM086262 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALLEN, BENJAMIN · 2009 to 2024
$6.1M
Development of novel anti-leukemia agents targeting the menin-MLL interactionR01CA160467 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GREMBECKA, JOLANTA · 2011 to 2021
$3.4M
Investigations of menin function in Ewing sarcomaR01CA218116 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LAWLOR, ELIZABETH R · 2018 to 2022
$2.5M
Targeting the MLL complex in Castration Resistant Prostate CancerR01CA200660 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHINNAIYAN, ARUL M, GREMBECKA, JOLANTA · 2016 to 2020
$1.9M
NCATS NIH HHS UL1 TR000433NCATS NIH HHS UL1 TR002240NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA160467NCI NIH HHS R01 CA200660NCI NIH HHS R01 CA218116NCI NIH HHS T32 CA009676NCI NIH HHS U54 CA168512NIDDK NIH HHS U24 DK097153NIGMS NIH HHS R25 GM086262
6 · The paper itself

Abstract

Developmental transcription programs are epigenetically regulated by multi-protein complexes, including the menin- and MLL-containing trithorax (TrxG) complexes, which promote gene transcription by depositing the H3K4me3 activating mark at target gene promoters. We recently reported that in Ewing sarcoma, MLL1 (lysine methyltransferase 2A, KMT2A) and menin are overexpressed and function as oncogenes. Small molecule inhibition of the menin-MLL interaction leads to loss of menin and MLL1 protein expression, and to inhibition of growth and tumorigenicity. Here, we have investigated the mechanistic basis of menin-MLL-mediated oncogenic activity in Ewing sarcoma. Bromouridine sequencing (Bru-seq) was performed to identify changes in nascent gene transcription in Ewing sarcoma cells, following exposure to the menin-MLL interaction inhibitor MI-503. Menin-MLL inhibition resulted in early and widespread reprogramming of metabolic processes. In particular, the serine biosynthetic pathway (SSP) was the pathway most significantly affected by MI-503 treatment. Baseline expression of SSP genes and proteins (PHGDH, PSAT1, and PSPH), and metabolic flux through the SSP were confirmed to be high in Ewing sarcoma. In addition, inhibition of PHGDH resulted in reduced cell proliferation, viability, and tumor growth in vivo, revealing a key dependency of Ewing sarcoma on the SSP. Loss of function studies validated a mechanistic link between menin and the SSP. Specifically, inhibition of menin resulted in diminished expression of SSP genes, reduced H3K4me3 enrichment at the PHGDH promoter, and complete abrogation of de novo serine and glycine biosynthesis, as demonstrated by metabolic tracing studies with

Indexed as

Energy MetabolismAnimalsAntineoplastic AgentsBone NeoplasmsCell Line, TumorCell ProliferationEpigenesis, GeneticGene Expression Regulation, NeoplasticHistone-Lysine N-MethyltransferaseHumansMaleMice, NudeMyeloid-Lymphoid Leukemia ProteinPhosphoglycerate DehydrogenasePhosphoric Monoester HydrolasesProto-Oncogene ProteinsAntineoplastic AgentsHistone-Lysine N-MethyltransferaseKMT2A protein, humanMEN1 protein, humanMyeloid-Lymphoid Leukemia ProteinPhosphoglycerate DehydrogenasePhosphoric Monoester Hydrolasesphosphoserine aminotransferasephosphoserine phosphataseProto-Oncogene ProteinsSerineTransaminasescancer metabolismepigeneticEwing sarcomaEWS-FLI1PHGDH

Identifiers

PMID29672864
PMCPMC6388767
OpenAlexW2799607270

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.