Evidence map›Paper›PMID 29672716›Full record

ArticleNucleic acids research2018

miR-122 does not impact recognition of the HCV genome by innate sensors of RNA but rather protects the 5' end from the cellular pyrophosphatases, DOM3Z and DUSP11.

Yalena Amador-Cañizares, Annie Bernier, Joyce A Wilson, Selena M Sagan

Abstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

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  6. Proceedings of the National Academy of Sciences of the United States of America · 2024
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  19. Next RNA Therapeutics: The Mine of Non-Coding.International journal of molecular sciences · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yalena Amador-CañizaresDepartment of Microbiology & Immunology, University of Saskatchewan, Saskatoon, SK, Canada.
Annie BernierDepartment of Microbiology & Immunology, McGill University, Montréal, QC, Canada.
Joyce A WilsonDepartment of Microbiology & Immunology, University of Saskatchewan, Saskatoon, SK, Canada.
Selena M SaganDepartment of Microbiology & Immunology, McGill University, Montréal, QC, Canada.

Funding

CIHR MOP-133458CIHR MOP-136915
6 · The paper itself

Abstract

Hepatitis C virus (HCV) recruits two molecules of the liver-specific microRNA-122 (miR-122) to the 5' end of its genome. This interaction promotes viral RNA accumulation, but the precise mechanism(s) remain incompletely understood. Previous studies suggest that miR-122 is able to protect the HCV genome from 5' exonucleases (Xrn1/2), but this protection is not sufficient to account for the effect of miR-122 on HCV RNA accumulation. Thus, we investigated whether miR-122 was also able to protect the viral genome from innate sensors of RNA or cellular pyrophosphatases. We found that miR-122 does not play a protective role against recognition by PKR, RIG-I-like receptors, or IFITs 1 and 5. However, we found that knockdown of both the cellular pyrophosphatases, DOM3Z and DUSP11, was able to rescue viral RNA accumulation of subgenomic replicons in the absence of miR-122. Nevertheless, pyrophosphatase knockdown increased but did not restore viral RNA accumulation of full-length HCV RNA in miR-122 knockout cells, suggesting that miR-122 likely plays an additional role(s) in the HCV life cycle, beyond 5' end protection. Overall, our results support a model in which miR-122 stabilizes the HCV genome by shielding its 5' terminus from cellular pyrophosphatase activity and subsequent turnover by exonucleases (Xrn1/2).

Indexed as

Adaptor Proteins, Signal TransducingCarrier ProteinsCell LineDual-Specificity PhosphataseseIF-2 KinaseExoribonucleasesGenome, ViralHepacivirusHost-Pathogen InteractionsHumansMicroRNAsMicrotubule-Associated ProteinsNuclear ProteinsRNA-Binding ProteinsRNA StabilityRNA, ViralAdaptor Proteins, Signal TransducingCarrier ProteinsDual-Specificity PhosphatasesDUSP11 protein, humanDXO protein, humanEIF2AK2 protein, humaneIF-2 KinaseExoribonucleasesIFIT1 protein, humanMicroRNAsMicrotubule-Associated ProteinsMIRN122 microRNA, humanNuclear ProteinsRNA-Binding ProteinsRNA, ViralXRN1 protein, human

Identifiers

PMID29672716
PMCPMC6007490

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.