Evidence map›Paper›PMID 29672715›Full record

ArticleNucleic acids research2018

The nonstop decay and the RNA silencing systems operate cooperatively in plants.

István Szádeczky-Kardoss, Tibor Csorba, Andor Auber, Anita Schamberger, Tünde Nyikó, János Taller, Tamás I Orbán, József Burgyán, Dániel Silhavy

Abstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Article
  2. Review
  3. Elucidation of theFrontiers in plant science · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Crop antiviral defense: Past and future perspective.Science China. Life sciences · 2024
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Viruses · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

István Szádeczky-KardossAgricultural Biotechnology Institute, Szent-Györgyi 4, H-2100 Gödöllo, Hungary.
Tibor CsorbaAgricultural Biotechnology Institute, Szent-Györgyi 4, H-2100 Gödöllo, Hungary.
Andor AuberAgricultural Biotechnology Institute, Szent-Györgyi 4, H-2100 Gödöllo, Hungary.
Anita SchambergerInstitute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, 1117 Budapest, Hungary.
Tünde NyikóAgricultural Biotechnology Institute, Szent-Györgyi 4, H-2100 Gödöllo, Hungary.
János TallerUniversity Pannonia Georgikon, Festetics 7, 8360 Keszthely, Hungary.
Tamás I OrbánInstitute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, 1117 Budapest, Hungary.
József BurgyánAgricultural Biotechnology Institute, Szent-Györgyi 4, H-2100 Gödöllo, Hungary.
Dániel SilhavyAgricultural Biotechnology Institute, Szent-Györgyi 4, H-2100 Gödöllo, Hungary.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Translation-dependent mRNA quality control systems protect the protein homeostasis of eukaryotic cells by eliminating aberrant transcripts and stimulating the decay of their protein products. Although these systems are intensively studied in animals, little is known about the translation-dependent quality control systems in plants. Here, we characterize the mechanism of nonstop decay (NSD) system in Nicotiana benthamiana model plant. We show that plant NSD efficiently degrades nonstop mRNAs, which can be generated by premature polyadenylation, and stop codon-less transcripts, which are produced by endonucleolytic cleavage. We demonstrate that in plants, like in animals, Pelota, Hbs1 and SKI2 proteins are required for NSD, supporting that NSD is an ancient and conserved eukaryotic quality control system. Relevantly, we found that NSD and RNA silencing systems cooperate in plants. Plant silencing predominantly represses target mRNAs through endonucleolytic cleavage in the coding region. Here we show that NSD is required for the elimination of 5' cleavage product of mi- or siRNA-guided silencing complex when the cleavage occurs in the coding region. We also show that NSD and nonsense-mediated decay (NMD) quality control systems operate independently in plants.

Indexed as

Gene Expression Regulation, PlantRNA InterferenceRNA StabilityArabidopsisMicroRNAsNicotianaNonsense Mediated mRNA DecayPlant LeavesPlant ProteinsPolyribosomesRNA CleavageRNA, MessengerRNA, PlantMicroRNAsPlant ProteinsRNA, MessengerRNA, Plant

Identifiers

PMID29672715
PMCPMC5961432

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.