Evidence map›Paper›PMID 29672528›Full record

ArticlePloS one2018

Saccharomyces cerevisiae as a platform for assessing sphingolipid lipid kinase inhibitors.

Yugesh Kharel, Sayeh Agah, Tao Huang, Anna J Mendelson, Oluwafunmilayo T Eletu, Peter Barkey-Bircann, James Gesualdi, Jeffrey S Smith, Webster L Santos, Kevin R Lynch

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yugesh KharelDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0001-9241-6860
Sayeh AgahDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.
Tao HuangDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0002-6147-0490
Anna J MendelsonDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.
Oluwafunmilayo T EletuDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.
Peter Barkey-BircannDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.
James GesualdiDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.
Jeffrey S SmithBiochemistry & Molecular Genetics, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0001-7129-5094
Webster L SantosDepartment of Chemistry and VT Center for Drug Discovery, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0002-4731-8548
Kevin R LynchDepartments of Pharmacology, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0002-7376-922X

Funding

NAD Biosynthesis and the Regulation of SirtuinsR01GM075240 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI SMITH, JEFFREY SCOTT · 2005 to 2023
$4.9M
MD-PHAR Controlling sphingosine 1-phosphate synthesis and traffickingR01GM121075 · NIGMS · UNIVERSITY OF VIRGINIA · PI LYNCH, KEVIN R., SANTOS, WEBSTER L · 2016 to 2020
$2.1M
In Vivo Probes of Sphingosine Kinase FunctionR01GM104366 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI LYNCH, KEVIN R., SANTOS, WEBSTER L · 2013 to 2015
$1.1M
NIGMS NIH HHS R01 GM075240NIGMS NIH HHS R01 GM104366NIGMS NIH HHS R01 GM121075
6 · The paper itself

Abstract

Successful medicinal chemistry campaigns to discover and optimize sphingosine kinase inhibitors require a robust assay for screening chemical libraries and for determining rank order potencies. Existing assays for these enzymes are laborious, expensive and/or low throughput. The toxicity of excessive levels of phosphorylated sphingoid bases for the budding yeast, Saccharomyces cerevisiae, affords an assay wherein inhibitors added to the culture media rescue growth in a dose-dependent fashion. Herein, we describe our adaptation of a simple, inexpensive, and high throughput assay for assessing inhibitors of sphingosine kinase types 1 and 2 as well as ceramide kinase and for testing enzymatic activity of sphingosine kinase type 2 mutants. The assay was validated using recombinant enzymes and generally agrees with the rank order of potencies of existing inhibitors.

Indexed as

AnimalsDrug Evaluation, PreclinicalEnzyme InhibitorsHigh-Throughput Screening AssaysHumansMethanolMiceMutationPhosphotransferases (Alcohol Group Acceptor)PyrrolidinesSaccharomyces cerevisiaeSphingolipidsSphingosine KinaseSulfonesEnzyme InhibitorsMethanolPF-543Phosphotransferases (Alcohol Group Acceptor)PyrrolidinesSphingolipidsSphingosine Kinasesphingosine kinase 2, humansphingosine kinase 2, mouseSulfones

Identifiers

PMID29672528
PMCPMC5908134

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.