Evidence map›Paper›PMID 29672507›Full record

ArticlePLoS biology2018

Unconventional function of an Achaete-Scute homolog as a terminal selector of nociceptive neuron identity.

Neda Masoudi, Saeed Tavazoie, Lori Glenwinkel, Leesun Ryu, Kyuhyung Kim, Oliver Hobert

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  3. A gene expression atlas of a juvenile nervous system.bioRxiv : the preprint server for biology · 2025
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  9. Functional analysis of conservedbioRxiv : the preprint server for biology · 2024
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  13. Transcriptome age of individual cell types inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. MicroRNA-Dependent Control of Sensory Neuron Function Regulates Posture Behavior inThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Neda MasoudiDepartment of Biological Sciences, Howard Hughes Medical Institute, Columbia University, New York, United States of America.
Saeed TavazoieDepartment of Systems Biology, Columbia University Medical Center, New York, United States of America.
Lori GlenwinkelDepartment of Biological Sciences, Howard Hughes Medical Institute, Columbia University, New York, United States of America.
Leesun RyuDepartment of Brain and Cognitive Sciences, DGIST, Daegu, South Korea.
Kyuhyung KimDepartment of Brain and Cognitive Sciences, DGIST, Daegu, South Korea.
Oliver HobertDepartment of Biological Sciences, Howard Hughes Medical Institute, Columbia University, New York, United States of America.ORCID 0000-0002-7634-2854
Howard Hughes Medical Institute · USDaegu Gyeongbuk Institute of Science and Technology · KRColumbia University Irving Medical Center · US

Funding

Hormones: Molecular Mechanism of Action and FunctionsT32DK007328 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KOUSTENI, STAVROULA · 1986 to 2025
$7.8M
Predictive Learning of Transcriptional NetworksR01HG003219 · NHGRI · PRINCETON UNIVERSITY · PI TAVAZOIE, SAEED F · 2004 to 2015
$3.7M
Massively parallel mapping of all molecular interactions in a single tubeR01HG009065 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TAVAZOIE, SAEED F · 2015 to 2019
$3.2M
Building an expression atlas of C.elegans sensory receptorsR21NS096343 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HOBERT, OLIVER · 2016 to 2017
$430k
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG003219NHGRI NIH HHS R01 HG009065NIDDK NIH HHS T32 DK007328NINDS NIH HHS R21 NS096343
6 · The paper itself

Abstract

Proneural genes are among the most early-acting genes in nervous system development, instructing blast cells to commit to a neuronal fate. Drosophila Atonal and Achaete-Scute complex (AS-C) genes, as well as their vertebrate orthologs, are basic helix-loop-helix (bHLH) transcription factors with such proneural activity. We show here that a C. elegans AS-C homolog, hlh-4, functions in a fundamentally different manner. In the embryonic, larval, and adult nervous systems, hlh-4 is expressed exclusively in a single nociceptive neuron class, ADL, and its expression in ADL is maintained via transcriptional autoregulation throughout the life of the animal. However, in hlh-4 null mutants, the ADL neuron is generated and still appears neuronal in overall morphology and expression of panneuronal and pansensory features. Rather than acting as a proneural gene, we find that hlh-4 is required for the ADL neuron to function properly, to adopt its correct morphology, to express its unusually large repertoire of olfactory receptor-encoding genes, and to express other known features of terminal ADL identity, including neurotransmitter phenotype, neuropeptides, ion channels, and electrical synapse proteins. hlh-4 is sufficient to induce ADL identity features upon ectopic expression in other neuron types. The expression of ADL terminal identity features is directly controlled by HLH-4 via a phylogenetically conserved E-box motif, which, through bioinformatic analysis, we find to constitute a predictive feature of ADL-expressed terminal identity markers. The lineage that produces the ADL neuron was previously shown to require the conventional, transient proneural activity of another AS-C homolog, hlh-14, demonstrating sequential activities of distinct AS-C-type bHLH genes in neuronal specification. Taken together, we have defined here an unconventional function of an AS-C-type bHLH gene as a terminal selector of neuronal identity and we speculate that such function could be reflective of an ancestral function of an "ur-" bHLH gene.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsComputational BiologyElectrical SynapsesEmbryo, NonmammalianGene OntologyIon ChannelsLarvaMolecular Sequence AnnotationNeuropeptidesNeurotransmitter AgentsNociceptorsPhenotypeBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans ProteinsHLH-14 protein, C elegansIon ChannelsNeuropeptidesNeurotransmitter AgentsReceptors, Odorant

Identifiers

PMID29672507
PMCPMC5908064
OpenAlexW2799941240

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.