Evidence map›Paper›PMID 29670192›Full record

ArticleScientific reports2018

Mansonella ozzardi mitogenome and pseudogene characterisation provides new perspectives on filarial parasite systematics and CO-1 barcoding.

James Lee Crainey, Michel Abanto Marín, Túllio Romão Ribeiro da Silva, Jansen Fernandes de Medeiros, Felipe Arley Costa Pessoa, Yago Vinícius Santos, Ana Carolina Paulo Vicente, Sérgio Luiz Bessa Luz

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  4. Redescription, molecular characterisation andCurrent research in parasitology & vector-borne diseases · 2024
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  5. Filarial disease in the Brazilian Amazon and emerging opportunities for treatment and control.Current research in parasitology & vector-borne diseases · 2024
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  7. Molecular surveillance detects high prevalence of the neglected parasitemedRxiv : the preprint server for health sciences · 2023
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  8. Whole genome analysis of two sympatric humanFrontiers in cellular and infection microbiology · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. New Molecular Data on Filaria and itsPathogens (Basel, Switzerland) · 2020
    Article
  14. Complete Mitochondrial Genome Sequence ofMicrobiology resource announcements · 2020
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

James Lee CraineyInstituto Leônidas e Maria Deane/ILMD/FIOCRUZ, Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Manaus, Amazonas, Brazil. lee.crainey@gmail.com.ORCID 0000-0001-6812-9327
Michel Abanto MarínFundação Oswaldo Cruz, Instituto Oswaldo Cruz, Laboratório de Genética Molecular de Microrganismos/IOC/FIOCRUZ, Rio de Janeiro, Rio de Janeiro, Brazil.
Túllio Romão Ribeiro da SilvaInstituto Leônidas e Maria Deane/ILMD/FIOCRUZ, Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Manaus, Amazonas, Brazil.
Jansen Fernandes de MedeirosFundação Oswaldo Cruz, FIOCRUZ Rondônia, Laboratório de Entomologia, Porto Velho, Rondônia, Brazil.
Felipe Arley Costa PessoaInstituto Leônidas e Maria Deane/ILMD/FIOCRUZ, Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Manaus, Amazonas, Brazil.
Yago Vinícius SantosInstituto Leônidas e Maria Deane/ILMD/FIOCRUZ, Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Manaus, Amazonas, Brazil.
Ana Carolina Paulo VicenteFundação Oswaldo Cruz, Instituto Oswaldo Cruz, Laboratório de Genética Molecular de Microrganismos/IOC/FIOCRUZ, Rio de Janeiro, Rio de Janeiro, Brazil.
Sérgio Luiz Bessa LuzInstituto Leônidas e Maria Deane/ILMD/FIOCRUZ, Laboratório de Ecologia de Doenças Transmissíveis na Amazônia, Manaus, Amazonas, Brazil.
Fundação Oswaldo Cruz · BRInstituto Nacional de Pesquisas da Amazônia · BRUniversidad de La Frontera · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the broad distribution of M. ozzardi in Latin America and the Caribbean, there is still very little DNA sequence data available to study this neglected parasite's epidemiology. Mitochondrial DNA (mtDNA) sequences, especially the cytochrome oxidase (CO1) gene's barcoding region, have been targeted successfully for filarial diagnostics and for epidemiological, ecological and evolutionary studies. MtDNA-based studies can, however, be compromised by unrecognised mitochondrial pseudogenes, such as Numts. Here, we have used shot-gun Illumina-HiSeq sequencing to recover the first complete Mansonella genus mitogenome and to identify several mitochondrial-origin pseudogenes. Mitogenome phylogenetic analysis placed M. ozzardi in the Onchocercidae "ONC5" clade and suggested that Mansonella parasites are more closely related to Wuchereria and Brugia genera parasites than they are to Loa genus parasites. DNA sequence alignments, BLAST searches and conceptual translations have been used to compliment phylogenetic analysis showing that M. ozzardi from the Amazon and Caribbean regions are near-identical and that previously reported Peruvian M. ozzardi CO1 reference sequences are probably of pseudogene origin. In addition to adding a much-needed resource to the Mansonella genus's molecular tool-kit and providing evidence that some M. ozzardi CO1 sequence deposits are pseudogenes, our results suggest that all Neotropical M. ozzardi parasites are closely related.

Indexed as

Genome, MitochondrialPseudogenesAnimalsElectron Transport Complex IVGenomicsHumansMansonellaMansonelliasisPhylogenyRNA, RibosomalRNA, Ribosomal, 5SElectron Transport Complex IVRNA, RibosomalRNA, ribosomal, 12SRNA, Ribosomal, 5S

Identifiers

PMID29670192
PMCPMC5906601
OpenAlexW2805134387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.