Evidence map›Paper›PMID 29670105›Full record

ArticleNature communications2018

Viral proteins as a potential driver of histone depletion in dinoflagellates.

Nicholas A T Irwin, Benjamin J E Martin, Barry P Young, Martin J G Browne, Andrew Flaus, Christopher J R Loewen, Patrick J Keeling, LeAnn J Howe

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 49 citations in OpenAlex.

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  16. Orchestrated translation specializes dinoflagellate metabolism three times per day.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Nicholas A T IrwinDepartment of Biochemistry and Molecular Biology, Life Sciences Institute, University of British Columbia, Vancouver, V6T 1Z3, BC, Canada. nickatirwin@gmail.com.ORCID http://orcid.org/0000-0002-2904-8214
Benjamin J E MartinDepartment of Biochemistry and Molecular Biology, Life Sciences Institute, University of British Columbia, Vancouver, V6T 1Z3, BC, Canada.
Barry P YoungDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, V6T 1Z3, BC, Canada.
Martin J G BrowneCentre for Chromosome Biology, School of Life Sciences, National University of Ireland Galway, Galway, Ireland.
Andrew FlausCentre for Chromosome Biology, School of Life Sciences, National University of Ireland Galway, Galway, Ireland.
Christopher J R LoewenDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, V6T 1Z3, BC, Canada.
Patrick J KeelingDepartment of Botany, University of British Columbia, Vancouver, V6T 1Z4, BC, Canada.ORCID http://orcid.org/0000-0002-7644-0745
LeAnn J HoweDepartment of Biochemistry and Molecular Biology, Life Sciences Institute, University of British Columbia, Vancouver, V6T 1Z3, BC, Canada. ljhowe@mail.ubc.ca.
University of British Columbia · CAOllscoil na Gaillimhe – University of Galway · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within canonical eukaryotic nuclei, DNA is packaged with highly conserved histone proteins into nucleosomes, which facilitate DNA condensation and contribute to genomic regulation. Yet the dinoflagellates, a group of unicellular algae, are a striking exception to this otherwise universal feature as they have largely abandoned histones and acquired apparently viral-derived substitutes termed DVNPs (dinoflagellate-viral-nucleoproteins). Despite the magnitude of this transition, its evolutionary drivers remain unknown. Here, using Saccharomyces cerevisiae as a model, we show that DVNP impairs growth and antagonizes chromatin by localizing to histone binding sites, displacing nucleosomes, and impairing transcription. Furthermore, DVNP toxicity can be relieved through histone depletion and cells diminish their histones in response to DVNP expression suggesting that histone reduction could have been an adaptive response to these viral proteins. These findings provide insights into eukaryotic chromatin evolution and highlight the potential for horizontal gene transfer to drive the divergence of cellular systems.

Indexed as

Cell NucleusChromatinChromatin ImmunoprecipitationComputational BiologyDinoflagellidaDNAGenomeHistonesMicroscopy, FluorescenceNucleosomesPhenotypeSaccharomyces cerevisiaeTranscription, GeneticViral ProteinsChromatinDNAHistonesNucleosomesViral Proteins

Identifiers

PMID29670105
PMCPMC5906630
OpenAlexW2802410324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.