Evidence map›Paper›PMID 29669295›Full record

ArticleCell reports2018

A Quantitative Chemotherapy Genetic Interaction Map Reveals Factors Associated with PARP Inhibitor Resistance.

Hsien-Ming Hu, Xin Zhao, Swati Kaushik, Lilliane Robillard, Antoine Barthelet, Kevin K Lin, Khyati N Shah, Andy D Simmons, Mitch Raponi, Thomas C Harding and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Similar genetic profile in early and late stage urothelial tract cancer.Journal of cancer research and clinical oncology · 2024
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  3. Review
  4. Therapeutic Role of Synthetic Lethality inJournal of immunotherapy and precision oncology · 2024
    Review
  5. Review
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  9. Human Metastatic Cholangiocarcinoma Patient-Derived Xenografts and Tumoroids for Preclinical Drug Evaluation.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Transcriptome Patterns ofInternational journal of molecular sciences · 2021
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Hsien-Ming HuBioengineering and Therapeutic Sciences, Helen Diller Family Comprehensive Cancer Center and Institute for Computational Health Sciences. University of California, San Francisco, San Francisco, CA 94158, USA.
Xin ZhaoBioengineering and Therapeutic Sciences, Helen Diller Family Comprehensive Cancer Center and Institute for Computational Health Sciences. University of California, San Francisco, San Francisco, CA 94158, USA.
Swati KaushikBioengineering and Therapeutic Sciences, Helen Diller Family Comprehensive Cancer Center and Institute for Computational Health Sciences. University of California, San Francisco, San Francisco, CA 94158, USA.
Lilliane RobillardClovis Oncology, Inc., Boulder, CO 80301, USA.
Antoine BartheletBioengineering and Therapeutic Sciences, Helen Diller Family Comprehensive Cancer Center and Institute for Computational Health Sciences. University of California, San Francisco, San Francisco, CA 94158, USA.
Kevin K LinClovis Oncology, Inc., Boulder, CO 80301, USA.
Khyati N ShahBioengineering and Therapeutic Sciences, Helen Diller Family Comprehensive Cancer Center and Institute for Computational Health Sciences. University of California, San Francisco, San Francisco, CA 94158, USA.
Andy D SimmonsClovis Oncology, Inc., Boulder, CO 80301, USA.
Mitch RaponiClovis Oncology, Inc., Boulder, CO 80301, USA.
Thomas C HardingClovis Oncology, Inc., Boulder, CO 80301, USA.
Sourav BandyopadhyayBioengineering and Therapeutic Sciences, Helen Diller Family Comprehensive Cancer Center and Institute for Computational Health Sciences. University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: sourav.bandyopadhyay@ucsf.edu.
University of California, San Francisco · USClovis Oncology (United States) · US

Funding

The Cancer Target Discovery and Development Network at UCSFU01CA217882 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BANDYOPADHYAY, SOURAV, BIVONA, TREVER G · 2017 to 2021
$5.2M
Physical and Genetic Interaction Landscape of the Tyrosine KinomeR01GM107671 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BANDYOPADHYAY, SOURAV · 2014 to 2017
$1.8M
NCI NIH HHS U01 CA217882NIGMS NIH HHS R01 GM107671
6 · The paper itself

Abstract

Chemotherapy is used to treat most cancer patients, yet our understanding of factors that dictate response and resistance to such drugs remains limited. We report the generation of a quantitative chemical-genetic interaction map in human mammary epithelial cells charting the impact of the knockdown of 625 genes related to cancer and DNA repair on sensitivity to 29 drugs, covering all classes of chemotherapy. This quantitative map is predictive of interactions maintained in other cell lines, identifies DNA-repair factors, predicts cancer cell line responses to therapy, and prioritizes synergistic drug combinations. We identify that ARID1A loss confers resistance to PARP inhibitors in cells and ovarian cancer patients and that loss of GPBP1 causes resistance to cisplatin and PARP inhibitors through the regulation of genes involved in homologous recombination. This map helps navigate patient genomic data and optimize chemotherapeutic regimens by delineating factors involved in the response to specific types of DNA damage.

Indexed as

Gene Regulatory NetworksAntineoplastic AgentsBlood ProteinsCell Line, TumorCisplatinDNA-Binding ProteinsDNA RepairDrug Resistance, NeoplasmDrug SynergismFemaleHomologous RecombinationHumansNeoplasmsNuclear ProteinsOvarian NeoplasmsPoly(ADP-ribose) Polymerase InhibitorsAntineoplastic AgentsARID1A protein, humanBlood ProteinsCisplatinDNA-Binding ProteinsGPBP1 protein, humanNuclear ProteinsPoly(ADP-ribose) Polymerase InhibitorsTranscription Factorsbiomarkersbreast cancerchemotherapyDNA repairgenetic interactionsovarian cancersynthetic lethality

Identifiers

PMID29669295
PMCPMC5935461
OpenAlexW2744422848

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.