Evidence map›Paper›PMID 29669273›Full record

ArticleCell reports2018

In Vivo Structures of the Helicobacter pylori cag Type IV Secretion System.

Yi-Wei Chang, Carrie L Shaffer, Lee A Rettberg, Debnath Ghosal, Grant J Jensen

Abstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Subdomains of theLife science alliance · 2024
    Article
  8. Review
  9. Review
  10. Comparative Analysis of T4SS Molecular Architectures.Journal of microbiology and biotechnology · 2023
    Review
  11. A Proposal for a Consolidated Structural Model of the CagY Protein ofInternational journal of molecular sciences · 2023
    Article
  12. Role of the CagY antenna projection inInfection and immunity · 2023
    Article
  13. Article
  14. Review
  15. Article
  16. Structure and Function of the Dot/Icm T4SS.bioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Article
  19. Distinct regions ofeLife · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yi-Wei ChangDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Carrie L ShafferDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Lee A RettbergDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, Pasadena, CA 91125, USA.
Debnath GhosalDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Grant J JensenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, Pasadena, CA 91125, USA. Electronic address: jensen@caltech.edu.

Funding

Structure and Function of Pathogenesis-Associated Bacterial Structures by Electron CryotomographyR01AI127401 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI GRANT J JENSEN · 2016 to 2026
$3.9M
Determining the role of the CvpA protein in uropathogenic E. coli virulenceF32DK105720 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SHAFFER, CARRIE · 2015 to 2016
$95k
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI127401NIDDK NIH HHS F32 DK105720
6 · The paper itself

Abstract

The type IV secretion system (T4SS) is a versatile nanomachine that translocates diverse effector molecules between microbes and into eukaryotic cells. Here, using electron cryotomography, we reveal the molecular architecture of the Helicobacter pylori cag T4SS. Although most components are unique to H. pylori, the cag T4SS exhibits remarkable architectural similarity to other T4SSs. Our images revealed that, when H. pylori encounters host cells, the bacterium elaborates membranous tubes perforated by lateral ports. Sub-tomogram averaging of the cag T4SS machinery revealed periplasmic densities associated with the outer membrane, a central stalk, and peripheral wing-like densities. Additionally, we resolved pilus-like rod structures extending from the cag T4SS into the inner membrane, as well as densities within the cytoplasmic apparatus corresponding to a short central barrel surrounded by four longer barrels. Collectively, these studies reveal the structure of a dynamic molecular machine that evolved to function in the human gastric niche.

Indexed as

Bacterial ProteinsCell WallCryoelectron MicroscopyGastric MucosaHelicobacter pyloriHumansLegionellaType IV Secretion SystemsBacterial ProteinsType IV Secretion Systemsbacterial molecular machinesCagAcryo-ETelectron cryotomographygastric cancerHelicobacter pylorihost-pathogen interactionsubtomogram averagingtype IV secretion system

Identifiers

PMID29669273
PMCPMC5931392

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.