Evidence map›Paper›PMID 29669012›Full record

ArticleJournal of animal science2018

Characterization of the acute heat stress response in gilts: III. Genome-wide association studies of thermotolerance traits in pigs.

Kwan-Suk Kim, Jacob T Seibert, Zewde Edea, Kody L Graves, Eui-Soo Kim, Aileen F Keating, Lance H Baumgard, Jason W Ross, Max F Rothschild

Open access · bronzeAbstract read
In one paragraph

Article in Journal of animal science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Kwan-Suk KimDepartment of Animal Science, Iowa State University, Ames, IA.
Jacob T SeibertDepartment of Animal Science, Iowa State University, Ames, IA.
Zewde EdeaDepartment of Animal Science, Chungbuk National University, Cheongju, Chungbuk, Korea.
Kody L GravesDepartment of Animal Science, Iowa State University, Ames, IA.
Eui-Soo KimDepartment of Animal Science, Iowa State University, Ames, IA.
Aileen F KeatingDepartment of Animal Science, Iowa State University, Ames, IA.
Lance H BaumgardDepartment of Animal Science, Iowa State University, Ames, IA.
Jason W RossDepartment of Animal Science, Iowa State University, Ames, IA.
Max F RothschildDepartment of Animal Science, Iowa State University, Ames, IA.
Iowa State University · USChungbuk National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heat stress is one of the limiting factors negatively affecting pig production, health, and fertility. Characterizing genomic regions responsible for variation in HS tolerance would be useful in identifying important genetic factor(s) regulating physiological responses to HS. In the present study, we performed genome-wide association analyses for respiration rate (RR), rectal temperature (TR), and skin temperature (TS) during HS in 214 crossbred gilts genotyped for 68,549 single nucleotide polymorphisms (SNP) using the Porcine SNP 70K BeadChip. Considering the top 0.1% smoothed phenotypic variances explained by SNP windows, we detected 26, 26, 21, and 14 genes that reside within SNPs explaining the largest proportion of variance (top 25 SNP windows) and associated with change in RR (ΔRR) from thermoneutral (TN) conditions to HS environment, as well as the change in prepubertal TR (ΔTR), change in postpubertal ΔTR, and change in TS (ΔTS), respectively. The region between 28.85 Mb and 29.10 Mb on chromosome 16 explained about 0.05% of the observed variation for ΔRR. The growth hormone receptor (GHR) gene resides in this region and is associated with the HS response. The other important candidate genes associated with ΔRR (PAIP1, NNT, and TEAD4), ΔTR (LIMS2, TTR, and TEAD4), and ΔTS (ERBB4, FKBP1B, NFATC2, and ATP9A) have reported roles in the cellular stress response. The SNP explaining the largest proportion of variance and located within and in the vicinity of genes were related to apoptosis or cellular stress and are potential candidates that underlie the physiological response to HS in pigs.

Indexed as

Genome-Wide Association StudyHeat-Shock ResponseThermotoleranceAnimalsCohort StudiesFemaleFertilityGenotypeHeat Stress DisordersHot TemperaturePhenotypePolymorphism, Single NucleotideRespiratory RateSwine

Identifiers

PMID29669012
PMCPMC6095244
OpenAlexW2802965163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.