Evidence map›Paper›PMID 29668953›Full record

ArticleMolecular biology and evolution2018

Evolution of Genome Architecture in Archaea: Spontaneous Generation of a New Chromosome in Haloferax volcanii.

Darya Ausiannikava, Laura Mitchell, Hannah Marriott, Victoria Smith, Michelle Hawkins, Kira S Makarova, Eugene V Koonin, Conrad A Nieduszynski, Thorsten Allers

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. The halophilic archaeonMicrobiology spectrum · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Provirus deletion frommicroLife · 2025
    Article
  6. Development of a genetic system forApplied and environmental microbiology · 2024
    Article
  7. Form and function of archaeal genomes.Biochemical Society transactions · 2022
    Article
  8. Article
  9. Isolation of a virus causing a chronic infection in the archaeal model organismProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. What makes a megaplasmid?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  11. Open biology · 2020
    Review
  12. Archaeal DNA Replication.Annual review of microbiology · 2020
    Review
  13. Article
  14. Article
  15. Gene Expression ofInternational journal of molecular sciences · 2019
    Article
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Darya AusiannikavaSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, United Kingdom.
Laura MitchellSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, United Kingdom.
Hannah MarriottSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, United Kingdom.
Victoria SmithSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, United Kingdom.
Michelle HawkinsSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, United Kingdom.
Kira S MakarovaNational Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD.
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD.
Conrad A NieduszynskiSir William Dunn School of Pathology, University of Oxford, Oxford, United Kingdom.
Thorsten AllersSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, United Kingdom.

Funding

Biotechnology and Biological Sciences Research Council BB/K007211/2Biotechnology and Biological Sciences Research Council BB/M001393/1
6 · The paper itself

Abstract

The common ancestry of archaea and eukaryotes is evident in their genome architecture. All eukaryotic and several archaeal genomes consist of multiple chromosomes, each replicated from multiple origins. Three scenarios have been proposed for the evolution of this genome architecture: 1) mutational diversification of a multi-copy chromosome; 2) capture of a new chromosome by horizontal transfer; 3) acquisition of new origins and splitting into two replication-competent chromosomes. We report an example of the third scenario: the multi-origin chromosome of the archaeon Haloferax volcanii has split into two elements via homologous recombination. The newly generated elements are bona fide chromosomes, because each bears "chromosomal" replication origins, rRNA loci, and essential genes. The new chromosomes were stable during routine growth but additional genetic manipulation, which involves selective bottlenecks, provoked further rearrangements. To the best of our knowledge, rearrangement of a naturally evolved prokaryotic genome to generate two new chromosomes has not been described previously.

Indexed as

Biological EvolutionChromosomes, ArchaealGenome, ArchaealHaloferax volcaniiReplicon

Identifiers

PMID29668953
PMCPMC6063281

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.