Evidence map›Paper›PMID 29667809›Full record

ArticleAnalytical chemistry2018

Strand Displacement Probes Combined with Isothermal Nucleic Acid Amplification for Instrument-Free Detection from Complex Samples.

Elizabeth A Phillips, Taylor J Moehling, Sanchita Bhadra, Andrew D Ellington, Jacqueline C Linnes

Abstract read
In one paragraph

Article in Analytical chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Trial
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  9. Biochemically Programmable Isothermal PCR.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Elizabeth A PhillipsWeldon School of Biomedical Engineering , Purdue University , West Lafayette , Indiana 47907 , United States.
Taylor J MoehlingWeldon School of Biomedical Engineering , Purdue University , West Lafayette , Indiana 47907 , United States.
Sanchita BhadraInstitute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, and Department of Chemistry , The University of Texas at Austin , Austin , Texas 78712 , United States.
Andrew D EllingtonInstitute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, and Department of Chemistry , The University of Texas at Austin , Austin , Texas 78712 , United States.
Jacqueline C LinnesWeldon School of Biomedical Engineering , Purdue University , West Lafayette , Indiana 47907 , United States.ORCID 0000-0003-4962-0908

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sensitive and specific detection of pathogens via nucleic acid amplification is currently constrained to laboratory settings and portable equipment with costly fluorescent detectors. Nucleic acid-detecting lateral flow immunoassay strips (LFIAs) offer a low-cost visual transduction strategy at points of need. Unfortunately, these LFIAs frequently detect amplification byproducts that can yield spurious results which can only be deciphered through statistical analysis. We integrated customizable strand displacement probes into standard loop mediated isothermal amplification (LAMP) assays to prevent byproduct capture on commercial LFIAs. We find that combining strand displacement with LAMP (SD-LAMP) yields LFIA test band intensities that can be unequivocally interpreted by human subjects without additional instrumentation, thereby alleviating the need for a portable reader's analysis. Using SD-LAMP, we capture target amplicons on commercially available LFIAs from as few as 3.5 Vibrio cholerae and 2 750 Escherichia coli bacteria without false positive or false negative interpretation. Moreover, we demonstrate that LFIA capture of SD-LAMP products remain specific even in the presence of complex sample matrixes, providing a significant step toward reliable instrument-free pathogen detection outside of laboratories.

Indexed as

ImmunoassayNucleic Acid Amplification TechniquesCells, CulturedEscherichia coliHumansVibrio cholerae

Identifiers

PMID29667809
PMCPMC5990927

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.