Evidence map›Paper›PMID 29667327›Full record

ArticleCNS neuroscience & therapeutics2018

Novel West syndrome candidate genes in a Chinese cohort.

Jing Peng, Ying Wang, Fang He, Chen Chen, Li-Wen Wu, Li-Fen Yang, Yu-Ping Ma, Wen Zhang, Zi-Qing Shi, Chao Chen and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in CNS neuroscience & therapeutics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
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  8. A clinical and genotype-phenotype analysis of MACF1 variants.American journal of human genetics · 2025
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  15. Article
  16. New evidence supportsFrontiers in neurology · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Jing PengDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Ying WangDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Fang HeDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.ORCID 0000-0002-7627-0424
Chen ChenDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Li-Wen WuDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Li-Fen YangDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Yu-Ping MaDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Wen ZhangDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Zi-Qing ShiDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Chao ChenLaboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha, China.
Kun XiaLaboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha, China.
Hui GuoLaboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha, China.
Fei YinDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.
Nan PangDepartment of Pediatrics, Xiangya Hospital, Central South University, Changsha, China.ORCID 0000-0002-9557-9451
Central South University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimsWest syndrome (WS) is a classic form of early infantile epileptic encephalopathy (EIEE) characterized by tonic spasms with clustering, arrest of psychomotor development, and hypsarrhythmia on electroencephalography. Genetic defects play a critical role in the pathology of WS, and 54 EIEE genes have been identified till date. This study was designed to uncover new candidate genes for West syndrome.

methodsIn this study, we recruited 56 Chinese families with WS of unknown etiology. Whole exome sequencing (WES) was performed to identify Mendelian inheritance rare or novel variants. The association between candidate genes and WS was analyzed from many aspects, including recurrent genes in patients, predicted variant effect on genes, human tolerance to deficient genes, gene expression in the nervous system, coexpression with EIEE genes, mutual interaction with known EIEE proteins, genes related to ion channel or fragile X mental retardation protein function, and mouse models with manifestation of seizures. Genes with supporting evidence from those aspects were defined as highlight candidate genes.

resultsWhole exome sequencing identified 112 candidate variants in 89 genes. Among the candidate genes, 33 were autosomal dominant, 22 were autosomal recessive, and 34 were X-linked. Complex bioinformatic analysis revealed 17 highlight candidate genes: ATP2A2, CD99L2, CLCN6, CYFIP1, CYFIP2, GNB1, GPT2, HUWE1, KMT2D, MYO18A, NOS3, RYR1, RYR2, RYR3, TAF1, TECTA, and UBA1. The majority of highlight candidate genes are calcium-signaling pathway and mental retardation genes.

conclusionsThis is the first WES study of Chinese WS patients with unknown etiology. This combination of phenotypic and genomic data will enable further testing to elucidate mechanisms underlying the pathogenesis of WS.

Indexed as

Asian PeopleCalcium SignalingCohort StudiesComputational BiologyDatabases, GeneticElectroencephalographyExome SequencingFemaleGenetic Predisposition to DiseaseHumansInfantInfant, NewbornMaleMutationProtein Interaction MapsSpasms, Infantilecalcium-signaling pathway genesmental retardation geneswest syndromewhole exome sequencing

Identifiers

PMID29667327
PMCPMC6489871
OpenAlexW2802498898

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.