Evidence map›Paper›PMID 29666261›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Dynamic activation and regulation of the mitogen-activated protein kinase p38.

Ganesan Senthil Kumar, Michael W Clarkson, Micha B A Kunze, Daniele Granata, A Joshua Wand, Kresten Lindorff-Larsen, Rebecca Page, Wolfgang Peti

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. An optimizedJournal of biomolecular NMR · 2025
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  9. Dual-action kinase inhibitors influence p38α MAP kinase dephosphorylation.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  14. Linear motif specificity in signaling through p38α and ERK2 mitogen-activated protein kinases.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ganesan Senthil KumarDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721.
Michael W ClarksonDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721.
Micha B A KunzeDepartment of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.
Daniele GranataDepartment of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.
A Joshua WandJohnson Research Foundation, Department of Biochemistry and Biophysics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104.ORCID 0000-0001-8341-0782
Kresten Lindorff-LarsenDepartment of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.
Rebecca PageDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721.
Wolfgang PetiDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ 85721; wolfgangpeti@email.arizona.edu.

Funding

Dynamics & energetics of p38a kinase regulation by ligandsR01GM100910 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI PETI, WOLFGANG, WAND, A. JOSHUA · 2013 to 2016
$1.3M
NIGMS NIH HHS R01 GM100910
6 · The paper itself

Abstract

Mitogen-activated protein kinases, which include p38, are essential for cell differentiation and autophagy. The current model for p38 activation involves activation-loop phosphorylation with subsequent substrate binding leading to substrate phosphorylation. Despite extensive efforts, the molecular mechanism of activation remains unclear. Here, using NMR spectroscopy, we show how the modulation of protein dynamics across timescales activates p38. We find that activation-loop phosphorylation does not change the average conformation of p38; rather it quenches the loop ps-ns dynamics. We then show that substrate binding to nonphosphorylated and phosphorylated p38 results in uniform µs-ms backbone dynamics at catalytically essential regions and across the entire molecule, respectively. Together, these results show that phosphorylation and substrate binding flatten the energy landscape of the protein, making essential elements of allostery and activation dynamically accessible. The high degree of structural conservation among ser/thr kinases suggests that elements of this mechanism may be conserved across the kinase family.

Indexed as

Molecular Dynamics SimulationAllosteric RegulationEnzyme ActivationHumansNuclear Magnetic Resonance, Biomolecularp38 Mitogen-Activated Protein KinasesPhosphorylationProtein Structure, Secondaryp38 Mitogen-Activated Protein Kinaseskinase activationMAP kinaseNMR dynamicsNMR spectroscopysignaling

Identifiers

PMID29666261
PMCPMC5939092

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.