Evidence map›Paper›PMID 29666229›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria.

Ling Xu, Dan Naylor, Zhaobin Dong, Tuesday Simmons, Grady Pierroz, Kim K Hixson, Young-Mo Kim, Erika M Zink, Kristin M Engbrecht, Yi Wang and 13 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 280 papers.

0numbers the graph read from it
0cells of the map it votes in
280citing papers in PubMed
79.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

280 citing papers in PubMed, 656 citations in OpenAlex.

  1. Review
  2. Article
  3. Drought Stress Mediated Changes in Food Crops: Mechanisms and Remediation Strategies.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Diurnal dynamics of maize gene expression is associated with phyllosphere microbiome composition.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  8. Plant influence shapesMicrobiology spectrum · 2026
    Article
  9. Influence of seasonal humidity and nitrogen on soil ciliate and bacterial diversity beneath the canopy of Neltuma laevigata.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  10. Article
  11. Response ofApplied and environmental microbiology · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Plants (Basel, Switzerland) · 2026
    Article

220 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 1 country.

Ling XuDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Dan NaylorDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Zhaobin DongDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-1275-581X
Tuesday SimmonsDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Grady PierrozDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Kim K HixsonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99352.
Young-Mo KimEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99352.ORCID 0000-0002-8972-7593
Erika M ZinkEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99352.
Kristin M EngbrechtEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99352.
Yi WangDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Cheng GaoDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.ORCID 0000-0003-2522-7909
Stephanie DeGraafDepartment of Statistics, University of California, Berkeley, CA 94720.
Mary A MaderaDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Julie A SievertKearney Agricultural Research & Extension Center, Parlier, CA 93648.
Joy HollingsworthKearney Agricultural Research & Extension Center, Parlier, CA 93648.
Devon BirdseyeJoint Bioenergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Henrik V SchellerDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Robert HutmacherWestside Research & Extension Center, UC Department of Plant Sciences, University of California, Davis, Five Points, CA 93624.
Jeffery DahlbergKearney Agricultural Research & Extension Center, Parlier, CA 93648.
Christer JanssonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99352.ORCID 0000-0001-9548-093X
John W TaylorDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Peggy G LemauxDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Devin Coleman-DerrDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; colemanderr@berkeley.edu.
Plant Gene Expression Center · USPacific Northwest National Laboratory · USUniversity of California, Berkeley · USUniversity of Nebraska at Kearney · USLawrence Berkeley National Laboratory · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought stress is a major obstacle to crop productivity, and the severity and frequency of drought are expected to increase in the coming century. Certain root-associated bacteria have been shown to mitigate the negative effects of drought stress on plant growth, and manipulation of the crop microbiome is an emerging strategy for overcoming drought stress in agricultural systems, yet the effect of drought on the development of the root microbiome is poorly understood. Through 16S rRNA amplicon and metatranscriptome sequencing, as well as root metabolomics, we demonstrate that drought delays the development of the early sorghum root microbiome and causes increased abundance and activity of monoderm bacteria, which lack an outer cell membrane and contain thick cell walls. Our data suggest that altered plant metabolism and increased activity of bacterial ATP-binding cassette (ABC) transporter genes are correlated with these shifts in community composition. Finally, inoculation experiments with monoderm isolates indicate that increased colonization of the root during drought can positively impact plant growth. Collectively, these results demonstrate the role that drought plays in restructuring the root microbiome and highlight the importance of temporal sampling when studying plant-associated microbiomes.

Indexed as

BacteriaMicrobiotaATP-Binding Cassette TransportersBacterial ProteinsCell WallDehydrationPlant RootsRNA, BacterialRNA, Ribosomal, 16SSorghumATP-Binding Cassette TransportersBacterial ProteinsRNA, BacterialRNA, Ribosomal, 16Sdroughtmetatranscriptomemicrobiomerootsorghum

Identifiers

PMID29666229
PMCPMC5939072
OpenAlexW2801398546

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.