Evidence map›Paper›PMID 29663862›Full record

ArticleJournal of biomolecular structure & dynamics2019

Dynamics and structural stability effects of germline PTEN mutations associated with cancer versus autism phenotypes.

Iris Nira Smith, Stetson Thacker, Ritika Jaini, Charis Eng

Abstract read
In one paragraph

Article in Journal of biomolecular structure & dynamics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
  2. Recognizing genetic association between Lhermitte-Duclos Disease and Autism Spectrum Disorder in PTEN-related patients: a case report and literature comprehension.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Review
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  7. Article
  8. Article
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  11. Article
  12. Article
  13. Review
  14. Structural and Dynamic Effects of PTEN C-Terminal Tail Phosphorylation.Journal of chemical information and modeling · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Autism-associatedeLife · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Iris Nira Smitha Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic , Cleveland , OH , USA.ORCID http://orcid.org/0000-0001-5560-8871
Stetson Thackera Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic , Cleveland , OH , USA.ORCID http://orcid.org/0000-0001-6050-409X
Ritika Jainia Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic , Cleveland , OH , USA.
Charis Enga Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic , Cleveland , OH , USA.ORCID http://orcid.org/0000-0002-3693-5145
Cleveland Clinic Lerner College of Medicine · USCleveland Clinic · US

Funding

Selective Modulation of Thyroidal RadioiodineP01CA124570 · NCI · OHIO STATE UNIVERSITY · PI RINGEL, MATTHEW D · 2008 to 2017
$23.4M
Toward better characterization and clinical trial readiness for targeting neuropsychiatric manifestations in PTEN pathogenic variantsU54NS092090 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI M. Pilar Trelles · 2014 to 2026
$20.1M
RESEARCH ONCOLOGY TRAINING GRANTT32CA059366 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI JACKSON, MARK W. · 1993 to 2025
$5.5M
Molecular Medicine Training ProgramT32GM088088 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI SMITH, JONATHAN D · 2011 to 2020
$1.7M
NCI NIH HHS P01 CA124570NCI NIH HHS T32 CA059366NIGMS NIH HHS T32 GM088088NINDS NIH HHS U54 NS092090
6 · The paper itself

Abstract

Individuals with germline mutations in the tumor suppressor gene phosphatase and tensin homolog (PTEN), irrespective of clinical presentation, are diagnosed with PTEN hamartoma tumor syndrome (PHTS). PHTS confers a high risk of breast, thyroid, and other cancers or autism spectrum disorder (ASD) with macrocephaly. It remains unclear why mutations in one gene can lead to seemingly disparate phenotypes. Thus, we sought to identify differences in ASD vs. cancer-associated germline PTEN missense mutations by investigating putative structural effects induced by each mutation. We utilized a theoretical computational approach combining in silico structural analysis and molecular dynamics (MD) to interrogate 17 selected mutations from our patient population: six mutations were observed in patients with ASD (only), six mutations in patients with PHTS-associated cancer (only), four mutations shared across both phenotypes, and one mutation with both ASD and cancer. We demonstrate structural stability changes where all six cancer-associated mutations showed a global decrease in structural stability and increased dynamics across the domain interface with a proclivity to unfold, mediating a closed (inactive) active site. In contrast, five of the six ASD-associated mutations showed localized destabilization that contribute to the partial opening of the active site. Our results lend insight into distinctive structural effects of germline PTEN mutations associated with PTEN-ASD vs. those associated with PTEN-cancer, potentially aiding in identification of the shared and separate molecular features that contribute to autism or cancer, thus, providing a deeper understanding of genotype-phenotype relationships for germline PTEN mutations.

Indexed as

Germ-Line MutationMolecular Dynamics SimulationProtein ConformationAllelesAmino Acid SubstitutionAutism Spectrum DisorderBinding SitesCatalytic DomainGenetic Predisposition to DiseaseHumansMutation, MissenseNeoplasmsProtein BindingProtein StabilityPTEN PhosphohydrolaseStructure-Activity RelationshipPTEN PhosphohydrolasePTEN protein, humanASD: Autism spectrum disorderATP: Adenosine triphosphateautismcancerENCoM: Elastic network contact modelGROMACS: Groningen machine for chemical simulationsLINCS: Linear constraint solverMD: Molecular dynamicsmolecular dynamics simulationsNMA: Normal mode analysisPCA: Principal component analysisPDB: Protein data bankPHTS: hamartoma tumor syndromePIP: Phosphatidylinositol-3,4,5-triphosphatePIP: Phosphatidylinositol-4,5-biphosphatePME: Particle mesh Ewaldpoly(Glu-pTyr): Polymers of glutamate and tyrosine, 1:1 ratioprotein structure stabilityPTENPTEN: Phosphatase and tensin homolog deleted on chromosome tenRg: Radius of gyrationRMSD: Root mean square deviationVMD: Visual Molecular DynamicsWT: Wild-type

Identifiers

PMID29663862
PMCPMC6235728
OpenAlexW2799521326

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.