Evidence map›Paper›PMID 29663322›Full record

ArticleBiotechnology and bioengineering2018

Quantitatively characterizing drug-induced arrhythmic contractile motions of human stem cell-derived cardiomyocytes.

Plansky Hoang, Nathaniel Huebsch, Shin Hyuk Bang, Brian A Siemons, Bruce R Conklin, Kevin E Healy, Zhen Ma, Sabir Jacquir

Open access · greenAbstract read
In one paragraph

Article in Biotechnology and bioengineering, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Plansky HoangDepartment of Biomedical and Chemical Engineering, Syracuse University, Syracuse, New York.ORCID 0000-0002-1255-9587
Nathaniel HuebschDepartment of Bioengineering, University of California, Berkeley, California.
Shin Hyuk BangDepartment of Biomedical and Chemical Engineering, Syracuse University, Syracuse, New York.
Brian A SiemonsDepartment of Bioengineering, University of California, Berkeley, California.
Bruce R ConklinGlastone Institute of Cardiovascular Diseases, San Francisco, California.
Kevin E HealyDepartment of Bioengineering, University of California, Berkeley, California.
Zhen MaDepartment of Biomedical and Chemical Engineering, Syracuse University, Syracuse, New York.
Sabir JacquirLaboratoire LE2I UMR CNRS 6306, Université de Bourgogne Franche-Comté, Dijon, France.
Syracuse University · USUniversity of California, Berkeley · USCentre National de la Recherche Scientifique · FRGladstone Institutes · US

Funding

Modeling metabolic interactions of liver and fat with integrated microphysiological systemsUH3TR000487 · NCATS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HEALY, KEVIN EDWARD · 2014 to 2016
$2.9M
Human heart-on-a-chip for screening cardiomyopathy and chemotherapeutic cardiotoxicityR01HL130417 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI HEALY, KEVIN EDWARD · 2017 to 2020
$2.3M
Protein quality control, cardiomyopathy, cardiotoxicity and human isogenic iPSCsR01HL135358 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI CONKLIN, BRUCE R · 2017 to 2020
$2.0M
American Heart Association-American Stroke Association 16POST27750031NCATS NIH HHS UH3 TR000487NHLBI NIH HHS R01 HL130417NHLBI NIH HHS R01 HL135358
6 · The paper itself

Abstract

Quantification of abnormal contractile motions of cardiac tissue has been a noteworthy challenge and significant limitation in assessing and classifying the drug-induced arrhythmias (i.e., Torsades de pointes). To overcome these challenges, researchers have taken advantage of computational image processing tools to measure contractile motion from cardiomyocytes derived from human induced pluripotent stem cells (hiPSC-CMs). However, the amplitude and frequency analysis of contractile motion waveforms does not produce sufficient information to objectively classify the degree of variations between two or more sets of cardiac contractile motions. In this paper, we generated contractile motion data from beating hiPSC-CMs using motion tracking software based on optical flow analysis, and then implemented a computational algorithm, phase space reconstruction (PSR), to derive parameters (embedding, regularity, and fractal dimensions) to further characterize the dynamic nature of the cardiac contractile motions. Application of drugs known to cause cardiac arrhythmia induced significant changes to these resultant dimensional parameters calculated from PSR analysis. Integrating this new computational algorithm with the existing analytical toolbox of cardiac contractile motions will allow us to expand current assessments of cardiac tissue physiology into an automated, high-throughput, and quantifiable manner which will allow more objective assessments of drug-induced proarrhythmias.

Indexed as

Arrhythmias, CardiacCytological TechniquesHumansImage Processing, Computer-AssistedInduced Pluripotent Stem CellsMotionMyocardial ContractionMyocytes, CardiacOptical ImagingSoftwarearrhythmiabiosignal processingcardiac motionoptical flowphase space reconstruction

Identifiers

PMID29663322
PMCPMC6283051
OpenAlexW2802885058

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.