Evidence map›Paper›PMID 29662148›Full record

ArticleScientific reports2018

Emergence of Human G2P[4] Rotaviruses in the Post-vaccination Era in South Korea: Footprints of Multiple Interspecies Re-assortment Events.

Hien Dang Thanh, Van Trung Tran, Inseok Lim, Wonyong Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Trial
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  11. The Rotavirus Vaccine Landscape, an Update.Pathogens (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hien Dang ThanhDepartment of Microbiology, Chung-Ang University College of Medicine, Seoul, 06974, South Korea.
Van Trung TranDepartment of Microbiology, Chung-Ang University College of Medicine, Seoul, 06974, South Korea.
Inseok LimDepartment of Pediatrics, Chung-Ang University College of Medicine, Seoul, 06974, South Korea.
Wonyong KimDepartment of Microbiology, Chung-Ang University College of Medicine, Seoul, 06974, South Korea. kimwy@cau.ac.kr.
Chung-Ang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

After the introduction of two global rotavirus vaccines, RotaTeq in 2007 and Rotarix in 2008 in South Korea, G1[P8] rotavirus was the major rotavirus genotype in the country until 2012. However, in this study, an emergence of G2P[4] as the dominant genotype during the 2013 to 2015 season has been reported. Genetic analysis revealed that these viruses had typical DS-1-like genotype constellation and showed evidence of re-assortment in one or more genome segments, including the incorporation of NSP4 genes from strains B-47/2008 from a cow and R4/Haryana/2007 from a buffalo in India, and the VP1 and VP3 genes from strain GO34/1999 from a goat in Bangladesh. Compared to the G2 RotaTeq vaccine strain, 17-24 amino acid changes, specifically A87T, D96N, S213D, and S242N substitutions in G2 epitopes, were observed. These results suggest that multiple interspecies re-assortment events might have contributed to the emergence of G2P[4] rotaviruses in the post-vaccination era in South Korea.

Indexed as

Genome, ViralPhylogenyAmino Acid SequenceAnimalsCapsid ProteinsCattleGenotypeGlycoproteinsHumansRepublic of KoreaRotavirusRotavirus InfectionsRotavirus VaccinesToxins, BiologicalViral Nonstructural ProteinsCapsid ProteinsGlycoproteinsNS28 protein, rotavirusRotavirus VaccinesToxins, BiologicalViral Nonstructural Proteins

Identifiers

PMID29662148
PMCPMC5902508
OpenAlexW2805443149

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.