Evidence map›Paper›PMID 29662110›Full record

ArticleScientific reports2018

Identification of human glycosyltransferase genes expressed in erythroid cells predicts potential carbohydrate blood group loci.

Magnus Jöud, Mattias Möller, Martin L Olsson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Revealing Glycosylation Patterns inJournal of agricultural and food chemistry · 2024
    Article
  4. Article
  5. Article
  6. Glycoproteomic and Phenotypic Elucidation ofInternational journal of molecular sciences · 2022
    Article
  7. Review
  8. Mammalian cell proliferation requires noncatalytic functions of O-GlcNAc transferase.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Missense mutations in the C-terminal portion of theBiochemistry and biophysics reports · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Magnus JöudHematology and Transfusion Medicine, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0002-4734-0040
Mattias MöllerHematology and Transfusion Medicine, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0001-6065-0046
Martin L OlssonHematology and Transfusion Medicine, Department of Laboratory Medicine, Lund University, Lund, Sweden. Martin_L.Olsson@med.lu.se.ORCID 0000-0003-1647-9610
Lund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycans are biologically important structures synthesised by glycosyltransferase (GT) enzymes. Disruptive genetic null variants in GT genes can lead to serious illness but benign phenotypes are also seen, including antigenic differences on the red blood cell (RBC) surface, giving rise to blood groups. To characterise known and potential carbohydrate blood group antigens without a known underlying gene, we searched public databases for human GT loci and investigated their variation in the 1000 Genomes Project (1000 G). We found 244 GT genes, distributed over 44 families. All but four GT genes had missense variants or other variants predicted to alter the amino acid sequence, and 149 GT genes (61%) had variants expected to cause null alleles, often associated with antigen-negative blood group phenotypes. In RNA-Seq data generated from erythroid cells, 155 GT genes were expressed at a transcript level comparable to, or higher than, known carbohydrate blood group loci. Filtering for GT genes predicted to cause a benign phenotype, a set of 30 genes remained, 16 of which had variants in 1000 G expected to result in null alleles. Our results identify potential blood group loci and could serve as a basis for characterisation of the genetic background underlying carbohydrate RBC antigens.

Indexed as

ABO Blood-Group SystemAllelesCarbohydratesErythroid CellsGenetic LociGenetic VariationGlycosyltransferasesHumansMutation, MissensePhenotypeABO Blood-Group SystemCarbohydratesGlycosyltransferases

Identifiers

PMID29662110
PMCPMC5902498
OpenAlexW2799471936

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.