Evidence map›Paper›PMID 29661845›Full record

ArticleJournal of cell science2018

Lysosome enlargement during inhibition of the lipid kinase PIKfyve proceeds through lysosome coalescence.

Christopher H Choy, Golam Saffi, Matthew A Gray, Callen Wallace, Roya M Dayam, Zhen-Yi A Ou, Guy Lenk, Rosa Puertollano, Simon C Watkins, Roberto J Botelho

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cell science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 154 citations in OpenAlex.

  1. PI(3,5)PScience advances · 2026
    Article
  2. Quantitative comparison of PI(3,5)PMolecular biology of the cell · 2026
    Article
  3. Article
  4. Article
  5. A PI(3,5)PNature communications · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. PIKfyve mediates the maturation of mycobacteria-containing vesicles.Frontiers in cellular and infection microbiology · 2026
    Article
  10. Lysosomal swelling triggers LRRK2 activity.bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Quantitative comparison of PI(3,5)PbioRxiv : the preprint server for biology · 2025
    Article
  14. Review
  15. Article
  16. LYVAC/PDZD8 is a lysosomal vacuolator.Science (New York, N.Y.) · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Christopher H ChoyDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada, M5B2K3.
Golam SaffiDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada, M5B2K3.
Matthew A GrayDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada, M5B2K3.
Callen WallaceDepartment of Cell Biology, University of Pittsburgh, Pittsburgh, PA 15261, USA.
Roya M DayamDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada, M5B2K3.
Zhen-Yi A OuDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada, M5B2K3.
Guy LenkDepartment of Human Genetics, University of Michigan, Ann Arbor, MI 48109, USA.
Rosa PuertollanoCell Biology and Physiology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, 50 South Drive, Building 50, Room 3537, Bethesda, MD 20892, USA.
Simon C WatkinsDepartment of Cell Biology, University of Pittsburgh, Pittsburgh, PA 15261, USA.
Roberto J BotelhoDepartment of Chemistry and Biology, Ryerson University, Toronto, ON, Canada, M5B2K3 rbotelho@ryerson.ca.ORCID 0000-0002-7820-0999
Toronto Metropolitan University · CAUniversity of Pittsburgh · USNational Institutes of Health · USUniversity of Michigan · US

Funding

Lysosome biogenesis and homeostasisZIAHL006151 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI PUERTOLLANO, ROSA · 2012 to 2025
$15.0M
INSERTIONAL MUTANTS AND DEVELOPMENT IN TRANSGENIC MICER01GM024872 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MEISLER, MIRIAM H · 1985 to 2024
$10.7M
Role of endolysosomal channels in calcium homeostasis and traffickingZIAHL006075 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI PUERTOLLANO, ROSA · 2010 to 2025
$8.7M
NIGMS NIH HHS R01 GM024872
6 · The paper itself

Abstract

Lysosomes receive and degrade cargo from endocytosis, phagocytosis and autophagy. They also play an important role in sensing and instructing cells on their metabolic state. The lipid kinase PIKfyve generates phosphatidylinositol-3,5-bisphosphate to modulate lysosome function. PIKfyve inhibition leads to impaired degradative capacity, ion dysregulation, abated autophagic flux and a massive enlargement of lysosomes. Collectively, this leads to various physiological defects, including embryonic lethality, neurodegeneration and overt inflammation. The reasons for such drastic lysosome enlargement remain unclear. Here, we examined whether biosynthesis and/or fusion-fission dynamics contribute to swelling. First, we show that PIKfyve inhibition activates TFEB, TFE3 and MITF, enhancing lysosome gene expression. However, this did not augment lysosomal protein levels during acute PIKfyve inhibition, and deletion of TFEB and/or related proteins did not impair lysosome swelling. Instead, PIKfyve inhibition led to fewer but enlarged lysosomes, suggesting that an imbalance favouring lysosome fusion over fission causes lysosome enlargement. Indeed, conditions that abated fusion curtailed lysosome swelling in PIKfyve-inhibited cells.

Indexed as

AnimalsAutophagyBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsFibroblastsHeLa CellsHumansIonsLysosomesMiceMice, KnockoutPhosphatidylinositol 3-KinasesPhosphatidylinositol PhosphatesBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsIonsPhosphatidylinositol 3-KinasesPhosphatidylinositol PhosphatesPIKFYVE protein, humanPikfyve protein, mouseTFE3 protein, humanTFEB protein, humanFissionFusionLysosomesOrganellesPhosphoinositidesTranscription factors

Identifiers

PMID29661845
PMCPMC6031331
OpenAlexW2953357224

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.