Evidence map›Paper›PMID 29660012›Full record

ArticleNucleic acids research2018

Coordination of Rad1-Rad10 interactions with Msh2-Msh3, Saw1 and RPA is essential for functional 3' non-homologous tail removal.

Robin Eichmiller, Melisa Medina-Rivera, Rachel DeSanto, Eugen Minca, Christopher Kim, Cory Holland, Ja-Hwan Seol, Megan Schmit, Diane Oramus, Jessica Smith and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Microbial cell (Graz, Austria) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Biochemistry and biophysics reports · 2021
    Article
  7. Variants of the humanMicrobial cell (Graz, Austria) · 2020
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Robin EichmillerDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
Melisa Medina-RiveraDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
Rachel DeSantoDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
Eugen MincaDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
Christopher KimDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA.
Cory HollandDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA.
Ja-Hwan SeolDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA.
Megan SchmitDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
Diane OramusDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
Jessica SmithDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
Ignacio F GallardoDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712, USA.
Ilya J FinkelsteinDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX 78712, USA.
Sang Eun LeeDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA.
Jennifer A SurteesDepartment of Biochemistry, University at Buffalo (SUNY), Buffalo, NY 14214, USA.
University at Buffalo, State University of New York · USThe University of Texas Health Science Center at San Antonio · USThe University of Texas at Austin · US

Funding

Mechanisms of Error Prone Repair of DNA BreaksR01GM071011 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEE, SANG EUN · 2004 to 2021
$4.5M
Enabling Access to Cutting-Edge Biomedical and Behavioral ScienceR25GM095459 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI DUBOCOVICH, MARGARITA L · 2012 to 2021
$4.4M
Mechanistic Characterization of the First Steps of Human DNA Break RepairR01GM120554 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI FINKELSTEIN, ILYA J · 2016 to 2020
$1.5M
Mechanism, specificity, and design of CRISPR RNA-mediated gene regulationR01GM124141 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI FINKELSTEIN, ILYA J · 2017 to 2020
$1.2M
NIGMS NIH HHS R01 GM071011NIGMS NIH HHS R01 GM120554NIGMS NIH HHS R01 GM124141NIGMS NIH HHS R25 GM095459
6 · The paper itself

Abstract

Double strand DNA break repair (DSBR) comprises multiple pathways. A subset of DSBR pathways, including single strand annealing, involve intermediates with 3' non-homologous tails that must be removed to complete repair. In Saccharomyces cerevisiae, Rad1-Rad10 is the structure-specific endonuclease that cleaves the tails in 3' non-homologous tail removal (3' NHTR). Rad1-Rad10 is also an essential component of the nucleotide excision repair (NER) pathway. In both cases, Rad1-Rad10 requires protein partners for recruitment to the relevant DNA intermediate. Msh2-Msh3 and Saw1 recruit Rad1-Rad10 in 3' NHTR; Rad14 recruits Rad1-Rad10 in NER. We created two rad1 separation-of-function alleles, rad1R203A,K205A and rad1R218A; both are defective in 3' NHTR but functional in NER. In vitro, rad1R203A,K205A was impaired at multiple steps in 3' NHTR. The rad1R218A in vivo phenotype resembles that of msh2- or msh3-deleted cells; recruitment of rad1R218A-Rad10 to recombination intermediates is defective. Interactions among rad1R218A-Rad10 and Msh2-Msh3 and Saw1 are altered and rad1R218A-Rad10 interactions with RPA are compromised. We propose a model in which Rad1-Rad10 is recruited and positioned at the recombination intermediate through interactions, between Saw1 and DNA, Rad1-Rad10 and Msh2-Msh3, Saw1 and Msh2-Msh3 and Rad1-Rad10 and RPA. When any of these interactions is altered, 3' NHTR is impaired.

Indexed as

DNA-Binding ProteinsDNA Breaks, Double-StrandedDNA End-Joining RepairDNA Repair EnzymesEndonucleasesMutationMutS Homolog 2 ProteinMutS Homolog 3 ProteinProtein Interaction MappingReplication Protein ASaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSingle-Strand Specific DNA and RNA EndonucleasesUltraviolet RaysDNA-Binding ProteinsDNA Repair EnzymesEndonucleasesMSH2 protein, S cerevisiaeMSH3 protein, S cerevisiaeMutS Homolog 2 ProteinMutS Homolog 3 ProteinRAD10 protein, S cerevisiaeRAD1 protein, S cerevisiaeReplication Protein ARFA1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSaw1 protein, S cerevisiaeSingle-Strand Specific DNA and RNA Endonucleases

Identifiers

PMID29660012
PMCPMC6007489
OpenAlexW2796414138

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.