Evidence map›Paper›PMID 29659927›Full record

ArticleThe Journal of infectious diseases2018

H1N1pdm09 Influenza Virus and Its Descendants Lack Extra-epitopic Amino Acid Residues Associated With Reduced Recognition by M158-66-Specific CD8+ T Cells.

Carolien E van de Sandt, Kyung A Sagong, Mark R Pronk, Theo M Bestebroer, Monique I Spronken, Marion P G Koopmans, Ron A M Fouchier, Guus F Rimmelzwaan

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Back to the Future: Lessons Learned From the 1918 Influenza Pandemic.Frontiers in cellular and infection microbiology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Carolien E van de SandtDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.
Kyung A SagongDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.
Mark R PronkDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.
Theo M BestebroerDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.
Monique I SpronkenDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.
Marion P G KoopmansDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.
Ron A M FouchierDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.
Guus F RimmelzwaanDepartment of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands.

Funding

NIAID NIH HHS HHSN272201400008C
6 · The paper itself

Abstract

Extra-epitopic amino acid residues affect recognition of human influenza A viruses (IAVs) by CD8+ T-lymphocytes (CTLs) specific for the highly conserved HLA-A*0201 restricted M158-66 epitope located in the matrix 1 (M1) protein. These residues are absent in the M1 protein of the 2009-pandemic IAV (H1N1pdm09). Consequently, stimulation with M1 protein of H1N1pdm09 IAV resulted in stronger activation and lytic activity of M158-66-specific CTLs than stimulation with seasonal H3N2 IAVs. During >6 years of circulation in the human population, descendants of the H1N1pdm09 virus had accumulated 4 other amino acid substitutions. However, these did not affect M158-66-specific CTL activation.

Indexed as

Amino Acid SubstitutionCD8-Positive T-LymphocytesEpitopes, T-LymphocyteHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanSequence DeletionViral Matrix ProteinsEpitopes, T-LymphocyteM1 protein, Influenza A virusViral Matrix Proteins

Identifiers

PMID29659927
PMCPMC6047425

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.