ArticleGigaScience2018
The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry).
Article in GigaScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
35 citing papers in PubMed, 52 citations in OpenAlex.
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- Multi-omics data provide insight into the adaptation of the glasshouse plant Rheum nobile to the alpine subnival zone.Communications biology · 2023Article
- A chromosome-scale Rhubarb (Rheum tanguticum) genome assembly provides insights into the evolution of anthraquinone biosynthesis.Communications biology · 2023Article
- Haplotype-resolved genomes of wild octoploid progenitors illuminate genomic diversifications from wild relatives to cultivated strawberry.Nature plants · 2023Article
- The Identification ofMolecules (Basel, Switzerland) · 2023Article
- Recombination Variation Shapes Phylogeny and Introgression in Wild Diploid Strawberries.Molecular biology and evolution · 2023Article
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- Characterisation of LTR-Retrotransposons ofInternational journal of molecular sciences · 2022Article
- Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals.Molecular biology and evolution · 2022Article
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- Chromosome-Level Genome Assembly Provides New Insights into Genome Evolution and Tuberous Root Formation ofGenes · 2021Article
- The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae.Horticulture research · 2021Article
- LTR-retrotransposon dynamics in common fig (Ficus carica L.) genome.BMC plant biology · 2021Article
Corrections and comments
- Erratum issued
Authors and funding
19 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Background: The genus Potentilla is closely related to that of Fragaria, the economically important strawberry genus. Potentilla micrantha is a species that does not develop berries but shares numerous morphological and ecological characteristics with Fragaria vesca. These similarities make P. micrantha an attractive choice for comparative genomics studies with F. vesca. Findings: In this study, the P. micrantha genome was sequenced and annotated, and RNA-Seq data from the different developmental stages of flowering and fruiting were used to develop a set of gene predictions. A 327 Mbp sequence and annotation of the genome of P. micrantha, spanning 2674 sequence contigs, with an N50 size of 335,712, estimated to cover 80% of the total genome size of the species was developed. The genus Potentilla has a characteristically larger genome size than Fragaria, but the recovered sequence scaffolds were remarkably collinear at the micro-syntenic level with the genome of F. vesca, its closest sequenced relative. A total of 33,602 genes were predicted, and 95.1% of bench-marking universal single-copy orthologous genes were complete within the presented sequence. Thus, we argue that the majority of the gene-rich regions of the genome have been sequenced. Conclusions: Comparisons of RNA-Seq data from the stages of floral and fruit development revealed genes differentially expressed between P. micrantha and F. vesca.The data presented are a valuable resource for future studies of berry development in Fragaria and the Rosaceae and they also shed light on the evolution of genome size and organization in this family.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.