Evidence map›Paper›PMID 29659701›Full record

ArticleAnnals of botany2018

Gain-of-function mutation of AtDICE1, encoding a putative endoplasmic reticulum-localized membrane protein, causes defects in anisotropic cell elongation by disturbing cell wall integrity in Arabidopsis.

Phi-Yen Le, Hyung-Woo Jeon, Min-Ha Kim, Eung-Jun Park, Hyoshin Lee, Indeok Hwang, Kyung-Hwan Han, Jae-Heung Ko

Open access · greenAbstract read
In one paragraph

Article in Annals of botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Phi-Yen LeDepartment of Plant & Environmental New Resources, Kyung Hee University, Yongin, Republic of Korea.
Hyung-Woo JeonDepartment of Plant & Environmental New Resources, Kyung Hee University, Yongin, Republic of Korea.
Min-Ha KimDepartment of Plant & Environmental New Resources, Kyung Hee University, Yongin, Republic of Korea.
Eung-Jun ParkDivision of Forest Biotechnology, Korea Forest Research Institute, Suwon, Republic of Korea.
Hyoshin LeeDivision of Forest Biotechnology, Korea Forest Research Institute, Suwon, Republic of Korea.
Indeok HwangDepartment of Horticulture and Department of Forestry, Michigan State University, East Lansing, MI, USA.
Kyung-Hwan HanDepartment of Horticulture and Department of Forestry, Michigan State University, East Lansing, MI, USA.
Jae-Heung KoDepartment of Plant & Environmental New Resources, Kyung Hee University, Yongin, Republic of Korea.
Kyung Hee University · KRKorea Forest Service · KRMichigan State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Aims: Anisotropic cell elongation depends on cell wall relaxation and cellulose microfibril arrangement. The aim of this study was to characterize the molecular function of AtDICE1 encoding a novel transmembrane protein involved in anisotropic cell elongation in Arabidopsis. Methods: Phenotypic characterizations of transgenic Arabidopsis plants mis-regulating AtDICE1 expression with different pharmacological treatments were made, and biochemical, cell biological and transcriptome analyses were performed. Key Results: Upregulation of AtDICE1 in Arabidopsis (35S::AtDICE1) resulted in severe dwarfism, probably caused by defects in anisotropic cell elongation. Epidermal cell swelling was evident in all tissues, and abnormal secondary wall thickenings were observed in pith cells of stems. These phenotypes were reproduced not only by inducible expression of AtDICE1 but also by overexpression of its poplar homologue in Arabidopsis. RNA interference suppression lines of AtDICE1 resulted in no observable phenotypic changes. Interestingly, wild-type plants treated with isoxaben, a cellulose biosynthesis inhibitor, phenocopied the 35S::AtDICE1 plants, suggesting that cellulose biosynthesis was compromised in the 35S::AtDICE1 plants. Indeed, disturbed cortical microtubule arrangements in 35S::AtDICE1/GFP-TuA6 plants were observed, and the cellulose content was significantly reduced in 35S::AtDICE1 plants. A promoter::GUS analysis showed that AtDICE1 is mainly expressed in vascular tissue, and transient expression of GFP:AtDICE1 in tobacco suggests that AtDICE1 is probably localized in the endoplasmic reticulum (ER). In addition, the external N-terminal conserved domain of AtDICE1 was found to be necessary for AtDICE1 function. Whole transcriptome analyses of 35S::AtDICE1 revealed that many genes involved in cell wall modification and stress/defence responses were mis-regulated. Conclusions: AtDICE1, a novel ER-localized transmembrane protein, may contribute to anisotropic cell elongation in the formation of vascular tissue by affecting cellulose biosynthesis.

Indexed as

TranscriptomeAnisotropyArabidopsisArabidopsis ProteinsCell EnlargementCelluloseCell WallEndoplasmic ReticulumEndoplasmic Reticulum StressGain of Function MutationMembrane ProteinsMicrotubulesNicotianaPhenotypePlants, Genetically ModifiedPlant Vascular BundleArabidopsis ProteinsAT2G41610 protein, ArabidopsisCelluloseMembrane Proteins

Identifiers

PMID29659701
PMCPMC6025203
OpenAlexW2795501674

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.