Evidence map›Paper›PMID 29659014›Full record

ArticleInternational journal of cancer2018

Single CpG hypermethylation, allele methylation errors, and decreased expression of multiple tumor suppressor genes in normal body cells of mutation-negative early-onset and high-risk breast cancer patients.

Julia Böck, Silke Appenzeller, Larissa Haertle, Tamara Schneider, Andrea Gehrig, Jörg Schröder, Simone Rost, Beat Wolf, Claus R Bartram, Christian Sutter and 1 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Impact of anthracycline-based chemotherapy on RB1 gene methylation in peripheral blood leukocytes and biomarkers of oxidative stress and inflammation in sarcoma patients.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Article
  3. Article
  4. Hypermethylation ofEXCLI journal · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. High-Resolution Bisulfite-Sequencing of Peripheral Blood DNA Methylation in Early-Onset and Familial Risk Breast Cancer Patients.Clinical cancer research : an official journal of the American Association for Cancer Research · 2019
    Article
  10. Article
  11. ConstitutiveCancers · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Julia BöckInstitute of Human Genetics, University of Würzburg, Würzburg, Germany.
Silke AppenzellerComprehensive Cancer Center, University Hospital, Würzburg, Germany.
Larissa HaertleInstitute of Human Genetics, University of Würzburg, Würzburg, Germany.
Tamara SchneiderInstitute of Human Genetics, University of Würzburg, Würzburg, Germany.
Andrea GehrigInstitute of Human Genetics, University of Würzburg, Würzburg, Germany.
Jörg SchröderInstitute of Human Genetics, University of Würzburg, Würzburg, Germany.
Simone RostInstitute of Human Genetics, University of Würzburg, Würzburg, Germany.
Beat WolfUniversity of Applied Sciences Western Switzerland, Fribourg, Switzerland.
Claus R BartramInstitute of Human Genetics, University Hospital, Heidelberg, Germany.
Christian SutterInstitute of Human Genetics, University Hospital, Heidelberg, Germany.
Thomas HaafInstitute of Human Genetics, University of Würzburg, Würzburg, Germany.ORCID 0000-0002-0737-0763
University of Würzburg · DEHeidelberg University · DEHES-SO University of Applied Sciences and Arts Western Switzerland · CHUniversitätsklinikum Würzburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To evaluate the role of constitutive epigenetic changes in normal body cells of BRCA1/BRCA2-mutation negative patients, we have developed a deep bisulfite sequencing assay targeting the promoter regions of 8 tumor suppressor (TS) genes (BRCA1, BRCA2, RAD51C, ATM, PTEN, TP53, MLH1, RB1) and the estrogene receptor gene (ESR1), which plays a role in tumor progression. We analyzed blood samples of two breast cancer (BC) cohorts with early onset (EO) and high risk (HR) for a heterozygous mutation, respectively, along with age-matched controls. Methylation analysis of up to 50,000 individual DNA molecules per gene and sample allowed quantification of epimutations (alleles with >50% methylated CpGs), which are associated with epigenetic silencing. Compared to ESR1, which is representative for an average promoter, TS genes were characterized by a very low (< 1%) average methylation level and a very low mean epimutation rate (EMR; < 0.0001% to 0.1%). With exception of BRCA1, which showed an increased EMR in BC (0.31% vs. 0.06%), there was no significant difference between patients and controls. One of 36 HR BC patients exhibited a dramatically increased EMR (14.7%) in BRCA1, consistent with a disease-causing epimutation. Approximately one third (15 of 44) EO BC patients exhibited increased rates of single CpG methylation errors in multiple TS genes. Both EO and HR BC patients exhibited global underexpression of blood TS genes. We propose that epigenetic abnormalities in normal body cells are indicative of disturbed mechanisms for maintaining low methylation and appropriate expression levels and may be associated with an increased BC risk.

Indexed as

DNA MethylationEpigenesis, GeneticMutationAdultAllelesBiomarkers, TumorBreastBreast NeoplasmsCase-Control StudiesCpG IslandsFemaleGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseHumansPrognosisPromoter Regions, GeneticBiomarkers, TumorTumor Suppressor Proteinsallele methylation errorbreast cancer susceptibility genedeep bisulfite sequencingearly onset breast cancerepimutationfamilial breast cancersingle CpG hypermethylationtumor suppressor gene

Identifiers

PMID29659014
PMCPMC6099327
OpenAlexW2801793270

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.