Evidence map›Paper›PMID 29658882›Full record

ArticleeLife2018

Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal muscle.

Laurent Perrin, Ursula Loizides-Mangold, Stéphanie Chanon, Cédric Gobet, Nicolas Hulo, Laura Isenegger, Benjamin D Weger, Eugenia Migliavacca, Aline Charpagne, James A Betts and 15 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03906409 (Effect of Nutrient Delivery Pattern on Biological Rhythms in Human Skeletal Muscle), which is not on this map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03906409 nacompletednot on this mapstarted 2019, after this paper: background citation

Effect of Nutrient Delivery Pattern on Biological Rhythms in Human Skeletal Muscle

TypeinterventionalSponsorUniversity of BathRan2019 to 2022Enrolled18ConditionsCircadian Rhythms, Feeding PatternsArmsConstant, Bolus
3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 135 citations in OpenAlex.

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  7. Co-expression network analysis reveals repression ofbioRxiv : the preprint server for biology · 2026
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 7 institutions in 3 countries.

Laurent PerrinDivision of Endocrinology, Diabetes, Hypertension and Nutrition, Department of Internal Medicine Specialties, University Hospital of Geneva, Geneva, Switzerland.
Ursula Loizides-Mangold *Division of Endocrinology, Diabetes, Hypertension and Nutrition, Department of Internal Medicine Specialties, University Hospital of Geneva, Geneva, Switzerland.ORCID 0000-0001-9233-2974
Stéphanie Chanon *CarMeN Laboratory, INSERM U1060, Oullins, France.
Cédric Gobet *Nestlé Institute of Health Sciences, Lausanne, Switzerland.
Nicolas HuloInstitute of Genetics and Genomics of Geneva, Geneva, Switzerland.ORCID 0000-0003-2640-636X
Laura IseneggerService for Biomathematical and Biostatistical Analyses, Institute of Genetics and Genomics in Geneva, University of Geneva, Geneva, Switzerland.
Benjamin D WegerNestlé Institute of Health Sciences, Lausanne, Switzerland.
Eugenia MigliavaccaNestlé Institute of Health Sciences, Lausanne, Switzerland.
Aline CharpagneNestlé Institute of Health Sciences, Lausanne, Switzerland.
James A BettsDepartment for Health, University of Bath, Bath, United Kingdom.
Jean-Philippe WalhinDepartment for Health, University of Bath, Bath, United Kingdom.
Iain TemplemanDepartment for Health, University of Bath, Bath, United Kingdom.
Keith StokesDepartment for Health, University of Bath, Bath, United Kingdom.
Dylan ThompsonDepartment for Health, University of Bath, Bath, United Kingdom.
Kostas TsintzasMRC/ARUK Centre for Musculoskeletal Ageing, School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.
Maud RobertDepartment of Digestive and Bariatric Surgery, Edouard Herriot University Hospital, Lyon, France.
Cedric HowaldInstitute of Genetics and Genomics of Geneva, Geneva, Switzerland.
Howard RiezmanDepartment of Biochemistry, NCCR Chemical Biology, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-4680-9422
Jerome N FeigeNestlé Institute of Health Sciences, Lausanne, Switzerland.
Leonidas G KaragounisExperimental Myology and Integrative Biology Research Cluster, Faculty of Sport and Health Sciences, University of St Mark and St John, Plymouth, United Kingdom.
Jonathan D JohnstonFaculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom.ORCID 0000-0001-8083-9794
Emmanouil T DermitzakisInstitute of Genetics and Genomics of Geneva, Geneva, Switzerland.
Frédéric Gachon *Nestlé Institute of Health Sciences, Lausanne, Switzerland.ORCID 0000-0002-9279-9707
Etienne Lefai *CarMeN Laboratory, INSERM U1060, Oullins, France.
Charna DibnerDivision of Endocrinology, Diabetes, Hypertension and Nutrition, Department of Internal Medicine Specialties, University Hospital of Geneva, Geneva, Switzerland.ORCID 0000-0002-4188-803X
University of Geneva · CHNestlé (Switzerland) · CHUniversity of Bath · GBUniversité Claude Bernard Lyon 1 · FRHospices Civils de Lyon · FRUniversity of Nottingham · GBUniversity of Surrey · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I008470/1Swiss National Science Foundation 31003A-166700Swiss National Science Foundation Sinergia Grant No. CRSII3-154405
6 · The paper itself

Abstract

Circadian regulation of transcriptional processes has a broad impact on cell metabolism. Here, we compared the diurnal transcriptome of human skeletal muscle conducted on serial muscle biopsies in vivo with profiles of human skeletal myotubes synchronized in vitro. More extensive rhythmic transcription was observed in human skeletal muscle compared to in vitro cell culture as a large part of the in vivo mRNA rhythmicity was lost in vitro. siRNA-mediated clock disruption in primary myotubes significantly affected the expression of ~8% of all genes, with impact on glucose homeostasis and lipid metabolism. Genes involved in GLUT4 expression, translocation and recycling were negatively affected, whereas lipid metabolic genes were altered to promote activation of lipid utilization. Moreover, basal and insulin-stimulated glucose uptake were significantly reduced upon

Indexed as

Circadian ClocksMetabolic Networks and PathwaysCLOCK ProteinsGene Expression ProfilingGlucoseHumansLipid MetabolismMuscle, SkeletalCLOCK protein, humanCLOCK ProteinsGlucosecircadian oscillatorshumanhuman biologyhuman skeletal musclemedicineRNA sequencing

Identifiers

PMID29658882
PMCPMC5902165
OpenAlexW2797820730

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.