Evidence map›Paper›PMID 29658302›Full record

ArticleAIDS research and human retroviruses2018

Molecular Epidemiology of HIV-1 Virus in Puerto Rico: Novel Cases of HIV-1 Subtype C, D, and CRF-24BG.

Pablo López, Omayra De Jesús, Yasuhiro Yamamura, Nayra Rodríguez, Andrea Arias, Raphael Sánchez, Yadira Rodríguez, Vivian Tamayo-Agrait, Wilfredo Cuevas, Vanessa Rivera-Amill

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pablo López1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .
Omayra De Jesús1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .
Yasuhiro Yamamura1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .
Nayra Rodríguez1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .
Andrea Arias1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .
Raphael Sánchez1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .
Yadira Rodríguez1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .
Vivian Tamayo-Agrait2 Puerto Rico Community Network for Clinical Research on AIDS, University of Puerto Rico , Medical Sciences Campus, San Juan, Puerto Rico .
Wilfredo Cuevas3 HIV Clinic Outpatient Department, Ryder Memorial Hospital , Humacao, Puerto Rico .
Vanessa Rivera-Amill1 AIDS Research Program, Ponce Health Sciences University-School of Medicine , Ponce Research Institute, Ponce, Puerto Rico .

Funding

VIRAL SEQUENCES IN PEDIATRIC HIV INFECTION IN PRG12MD007579 · NIMHD · PONCE SCHOOL OF MEDICINE · PI TORRES-RUIZ, JOSE A · 2012 to 2018
$15.9M
NIMHD NIH HHS G12 MD007579
6 · The paper itself

Abstract

HIV-1 subtype B virus is the most prevalent subtype in Puerto Rico (PR), accounting for about 90% of infection in the island. Recently, other subtypes and circulating recombinant forms (CRFs), including F(12_BF), A (01_BF), and CRF-39 BF-like, have been identified. The purpose of this study is to assess the distribution of drug resistance mutations and subtypes in PR. A total of 846 nucleotide sequences from the period comprising 2013 through 2017 were obtained from our "HIV Genotyping" test file. Phylogenetic and molecular epidemiology analyses were performed to evaluate the evolutionary dynamics and prevalence of drug resistance mutations. According to our results, we detected a decrease in the prevalence of protease inhibitor, nucleoside reverse transcriptase inhibitor (NRTI), and non-NRTI (NNRTI) resistance mutations over time. In addition, we also detected recombinant forms and, for the first time, identified subtypes C, D, and CRF-24BG in PR. Recent studies suggest that non-subtypes B are associated with a high risk of treatment failure and disease progression. The constant monitoring of viral evolution and drug resistance mutation dynamics is important to establish appropriate efforts for controlling viral expansion.

Indexed as

Drug Resistance, ViralGenotypeAdolescentAdultAgedAged, 80 and overFemaleHIV-1HIV InfectionsHumansMaleMiddle AgedMolecular EpidemiologyPrevalencePuerto RicoSequence Analysis, DNAdrug resistance mutationsHIV-1HIV-1 subtypes

Identifiers

PMID29658302
PMCPMC5994676

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.