Evidence map›Paper›PMID 29654279›Full record

ArticleNature communications2018

Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species.

Kate S Baker, Timothy J Dallman, Nigel Field, Tristan Childs, Holly Mitchell, Martin Day, François-Xavier Weill, Sophie Lefèvre, Mathieu Tourdjman, Gwenda Hughes and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Human vaccines & immunotherapeutics · 2026
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  4. New microbes and new infections · 2026
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  7. Surveillance of enteropathogenicJournal of medical microbiology · 2026
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  8. Investigation of an outbreak ofMicrobial genomics · 2026
    Article
  9. Review
  10. Review
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  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. The emergence of sexually transmissibleMicrobial genomics · 2025
    Article
  19. The emergence of metabolisms through Earth history and implications for biospheric evolution.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  20. Review

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kate S BakerInstitute for Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK. kbaker@liverpool.ac.uk.ORCID http://orcid.org/0000-0001-5850-1949
Timothy J DallmanGastrointestinal Bacterial Reference Unit, National Infection Service, Public Health England, London, NW9 5HT, UK.
Nigel FieldCentre for Molecular Epidemiology and Translational Research, Institute for Global Health, UCL, London, WC1E 6BT, UK.
Tristan ChildsCentre for Infectious Disease Surveillance and Control, National Infection Service, Public Health England, London, NW9 5HT, UK.
Holly MitchellCentre for Molecular Epidemiology and Translational Research, Institute for Global Health, UCL, London, WC1E 6BT, UK.
Martin DayGastrointestinal Bacterial Reference Unit, National Infection Service, Public Health England, London, NW9 5HT, UK.
François-Xavier WeillInstitut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, 75015, France.
Sophie LefèvreInstitut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, 75015, France.
Mathieu TourdjmanSanté Publique France, the French Public Health Agency, Saint-Maurice, 94415, France.
Gwenda HughesDepartment of HIV and STIs, National Infection Service, Public Health England, London, NW9 5HT, UK.
Claire JenkinsGastrointestinal Bacterial Reference Unit, National Infection Service, Public Health England, London, NW9 5HT, UK.
Nicholas ThomsonWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK. nrt@sanger.ac.uk.

Funding

Wellcome Trust
6 · The paper itself

Abstract

Horizontal gene transfer has played a role in developing the global public health crisis of antimicrobial resistance (AMR). However, the dynamics of AMR transfer through bacterial populations and its direct impact on human disease is poorly elucidated. Here, we study parallel epidemic emergences of multiple Shigella species, a priority AMR organism, in men who have sex with men to gain insight into AMR emergence and spread. Using genomic epidemiology, we show that repeated horizontal transfer of a single AMR plasmid among Shigella enhanced existing and facilitated new epidemics. These epidemic patterns contrasted with slighter, slower increases in disease caused by organisms with vertically inherited (chromosomally encoded) AMR. This demonstrates that horizontal transfer of AMR directly affects epidemiological outcomes of globally important AMR pathogens and highlights the need for integration of genomic analyses into all areas of AMR research, surveillance and management.

Indexed as

Gene Transfer, HorizontalAdolescentAdultAnti-Bacterial AgentsAzithromycinDrug Resistance, BacterialDysentery, BacillaryGenome-Wide Association StudyHomosexuality, MaleHumansMaleMicrobial Sensitivity TestsMiddle AgedPhenotypePhylogenyPlasmidsAnti-Bacterial AgentsAzithromycin

Identifiers

PMID29654279
PMCPMC5899146

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.