Evidence map›Paper›PMID 29654109›Full record

ArticleThe Biochemical journal2018

Nucleic acid-induced potentiation of matrix metalloproteinase-9 enzymatic activity.

Tyler Duellman, Xi Chen, Rie Wakamiya, Jay Yang

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tyler DuellmanDepartment of Anesthesiology, University of Wisconsin, School of Medicine and Public Health, Madison, WI 53705, U.S.A.
Xi ChenDepartment of Anesthesiology, University of Wisconsin, School of Medicine and Public Health, Madison, WI 53705, U.S.A.
Rie WakamiyaDepartment of Anesthesiology, University of Wisconsin, School of Medicine and Public Health, Madison, WI 53705, U.S.A.
Jay YangDepartment of Anesthesiology, University of Wisconsin, School of Medicine and Public Health, Madison, WI 53705, U.S.A. jyang75@wisc.edu.
University of Wisconsin–Madison · US

Funding

Training Program In Molecular AND Cellular PharmacologyT32GM008688 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI AUDHYA, ANJON · 1998 to 2020
$6.0M
Mitochondrial Kv1.3 potassium channels and lymphocyte apoptosis in sepsisR01GM086401 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI YANG, JAY · 2008 to 2011
$1.2M
Treatment for neuropathic pain targeting selective inhibition of MEKR01GM105665 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI YANG, JAY · 2014 to 2017
$1.1M
Sigma 1 receptor as a master regulator of pronociceptive protein trafficking in tR01GM107054 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RUOHO, ARNOLD EINO, YANG, JAY · 2013 to 2016
$1.1M
NIGMS NIH HHS R01 GM086401NIGMS NIH HHS R01 GM105665NIGMS NIH HHS R01 GM107054NIGMS NIH HHS T32 GM008688
6 · The paper itself

Abstract

Matrix metalloproteinases (MMPs) play varied roles in normal biology and diseases where, depending on the context, both inhibition and enhancement of the enzymatic activity may be beneficial. However, there are very few reports of positive modulators of MMP activity. We report that polynucleotides, including single-stranded DNA, RNA, and even double-stranded DNA, bind to and enhance the enzymatic activity of MMP9. This enhancement of MMP9 catalytic activity is not shared by biologically active polycationic molecules suggesting nonspecific charge screening as an unlikely mechanism. Deletion construct and MMP1, 2, and 3 studies suggest that the type-II fibronectin repeat domains of the enzyme appear to play a role in mediating the nucleotide potentiation of MMP9 activity. Single-stranded DNA enhances nerve growth factor-induced MMP9-dependent neurite extension in pheochromocytoma 12 cells providing evidence for potential biological significance of the nucleotide-mediated allosteric enhancement of the catalytic activity.

Indexed as

Neuronal OutgrowthAnimalsGene Expression Regulation, EnzymologicHEK293 CellsHumansImage Processing, Computer-AssistedMatrix Metalloproteinase 9Nucleic AcidsPC12 CellsProtein ConformationRatsMatrix Metalloproteinase 9MMP9 protein, humanNucleic Acidsenzymatic activityMMP9modulationnucleic acidspharmacology

Identifiers

PMID29654109
PMCPMC5941315
OpenAlexW2797960984

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.