Evidence map›Paper›PMID 29652884›Full record

ArticlePloS one2018

Neochloris oleoabundans is worth its salt: Transcriptomic analysis under salt and nitrogen stress.

Lenny de Jaeger, Benoit M Carreres, Jan Springer, Peter J Schaap, Gerrit Eggink, Vitor A P Martins Dos Santos, Rene H Wijffels, Dirk E Martens

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 53 citations in OpenAlex.

  1. Metabolic Profile ofPlants (Basel, Switzerland) · 2026
    Article
  2. Review
  3. Integrated Production of Microalgal Oil fromFoods (Basel, Switzerland) · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Effect of Single and Combined Expression ofFrontiers in plant science · 2019
    Article
  20. Selective and mild fractionation of microalgal proteins and pigments using aqueous two-phase systems.Journal of chemical technology and biotechnology (Oxford, Oxfordshire : 1986) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Lenny de JaegerBioprocess Engineering and AlgaePARC, Wageningen University & Research, Wageningen, The Netherlands.
Benoit M CarreresLaboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, The Netherlands.ORCID 0000-0002-7532-7572
Jan SpringerFood and Biobased Research and AlgaePARC, Wageningen University & Research, Wageningen, The Netherlands.
Peter J SchaapLaboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, The Netherlands.
Gerrit EgginkBioprocess Engineering and AlgaePARC, Wageningen University & Research, Wageningen, The Netherlands.
Vitor A P Martins Dos SantosLaboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, The Netherlands.
Rene H WijffelsBioprocess Engineering and AlgaePARC, Wageningen University & Research, Wageningen, The Netherlands.
Dirk E MartensBioprocess Engineering and AlgaePARC, Wageningen University & Research, Wageningen, The Netherlands.
Wageningen University & Research · NLLifeGlimmer (Germany) · DENord University · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neochloris oleoabundans is an oleaginous microalgal species that can be cultivated in fresh water as well as salt water. Using salt water gives the opportunity to reduce production costs and the fresh water footprint for large scale cultivation. Production of triacylglycerols (TAG) usually includes a biomass growth phase in nitrogen-replete conditions followed by a TAG accumulation phase under nitrogen-deplete conditions. This is the first report that provides insight in the saline resistance mechanism of a fresh water oleaginous microalgae. To better understand the osmoregulatory mechanism of N. oleoabundans during growth and TAG accumulating conditions, the transcriptome was sequenced under four different conditions: fresh water nitrogen-replete and -deplete conditions, and salt water (525 mM dissolved salts, 448mM extra NaCl) nitrogen-replete and -deplete conditions. In this study, several pathways are identified to be responsible for salt water adaptation of N. oleoabundans under both nitrogen-replete and -deplete conditions. Proline and the ascorbate-glutathione cycle seem to be of importance for successful osmoregulation in N. oleoabundans. Genes involved in Proline biosynthesis were found to be upregulated in salt water. This was supported by Nuclear magnetic resonance (NMR) spectroscopy, which indicated an increase in proline content in the salt water nitrogen-replete condition. Additionally, the lipid accumulation pathway was studied to gain insight in the gene regulation in the first 24 hours after nitrogen was depleted. Oil accumulation is increased under nitrogen-deplete conditions in a comparable way in both fresh and salt water. The mechanism behind the biosynthesis of compatible osmolytes can be used to improve N. oleoabundans and other industrially relevant microalgal strains to create a more robust and sustainable production platform for microalgae derived products in the future.

Indexed as

TranscriptomeBiomassBiosynthetic PathwaysChlorophytaComputational BiologyGene Expression ProfilingMagnetic Resonance SpectroscopyMicroalgaeMolecular Sequence AnnotationNitrogenOxidative StressSaltsSodium ChlorideStarchStress, PhysiologicalSucroseNitrogenSaltsSodium ChlorideStarchSucrose

Identifiers

PMID29652884
PMCPMC5898717
OpenAlexW2799416318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.