Evidence map›Paper›PMID 29652263›Full record

ArticleActa crystallographica. Section D, Structural biology2018

X-ray and UV radiation-damage-induced phasing using synchrotron serial crystallography.

Nicolas Foos, Carolin Seuring, Robin Schubert, Anja Burkhardt, Olof Svensson, Alke Meents, Henry N Chapman, Max H Nanao

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Single-support serial isomorphous replacement phasing.Acta crystallographica. Section D, Structural biology · 2022
    Article
  4. Review
  5. Article
  6. Choosing your (Friedel) mates wisely: grouping data sets to improve anomalous signal.Acta crystallographica. Section D, Structural biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Nicolas FoosStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Genoble, France.
Carolin SeuringCenter for Free-Electron Laser Science, Deutsches Elektronensynchrotron, Notkestrasse 85, 22607 Hamburg, Germany.ORCID 0000-0003-1000-0859
Robin SchubertThe Hamburg Centre for Ultrafast Imaging, Luruper Chaussee 149, 22761 Hamburg, Germany.
Anja BurkhardtPhoton Science, Deutsches Elektronensynchrotron, Notkestrasse 85, 22607 Hamburg, Germany.
Olof SvenssonStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Genoble, France.ORCID 0000-0002-6937-7039
Alke MeentsCenter for Free-Electron Laser Science, Deutsches Elektronensynchrotron, Notkestrasse 85, 22607 Hamburg, Germany.ORCID 0000-0001-6078-4095
Henry N ChapmanCenter for Free-Electron Laser Science, Deutsches Elektronensynchrotron, Notkestrasse 85, 22607 Hamburg, Germany.ORCID 0000-0002-4655-1743
Max H NanaoStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Genoble, France.
Universität Hamburg · DEEuropean Synchrotron Radiation Facility · FRDeutsches Elektronen-Synchrotron DESY · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Specific radiation damage can be used to determine phases de novo from macromolecular crystals. This method is known as radiation-damage-induced phasing (RIP). One limitation of the method is that the dose of individual data sets must be minimized, which in turn leads to data sets with low multiplicity. A solution to this problem is to use data from multiple crystals. However, the resulting signal can be degraded by a lack of isomorphism between crystals. Here, it is shown that serial synchrotron crystallography in combination with selective merging of data sets can be used to determine high-quality phases for insulin and thaumatin, and that the increased multiplicity can greatly enhance the success rate of the experiment.

Indexed as

SynchrotronsAnimalsCrystallizationCrystallography, X-RayInsulinMacromolecular SubstancesPlant ProteinsSwineUltraviolet RaysX-RaysInsulinMacromolecular SubstancesPlant Proteinsthaumatin protein, plantexperimental phasinggenetic algorithmsradiation damageradiation-damage-induced phasingsynchrotron serial crystallography

Identifiers

PMID29652263
PMCPMC5892880
OpenAlexW2795554729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.