Evidence map›Paper›PMID 29651731›Full record

ArticleJournal of the American Society for Mass Spectrometry2018

Identification of Sialic Acid Linkages on Intact Glycopeptides via Differential Chemical Modification Using IntactGIG-HILIC.

Shuang Yang, Wells W Wu, Rong-Fong Shen, Marshall Bern, John Cipollo

Abstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Mass Spectrometry-Based Comparative Analysis ofACS chemical neuroscience · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Mass spectrometry analysis of intact proteinJournal of Zhejiang University. Science. B · 2024
    Article
  8. Review
  9. The Hitchhiker's guide to glycoproteomics.Biochemical Society transactions · 2021
    Review
  10. Article
  11. Article
  12. Towards structure-focused glycoproteomics.Biochemical Society transactions · 2021
    Review
  13. Isomer-Specific Monitoring of SialylatedFrontiers in molecular biosciences · 2021
    Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shuang YangLaboratory of Bacterial Polysaccharides, Division of Bacterial, Parasitic and Allergenic Products, Center for Biologics Evaluation and Research, Food and Drug Administration, G614, Bldg 75, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA. shuang.yang@fda.hhs.gov.
Wells W WuFacility for Biotechnology Resources, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, MD, 20993, USA.
Rong-Fong ShenFacility for Biotechnology Resources, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, MD, 20993, USA.
Marshall BernProtein Metrics Inc., 1622 San Carlos Ave, Suite C, San Carlos, CA, 94070, USA.
John CipolloLaboratory of Bacterial Polysaccharides, Division of Bacterial, Parasitic and Allergenic Products, Center for Biologics Evaluation and Research, Food and Drug Administration, G637, Bldg 52/72, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA. john.cipollo@fad.hhs.gov.

Funding

Glycopeptide Identification with a Comprehensive Proteomics Search EngineR21GM122634 · NIGMS · PROTEIN METRICS, LLC · PI BERN, MARSHALL WAYNE · 2016 to 2017
$400k
NIH HHS R21GM122634
6 · The paper itself

Abstract

Mass spectrometric analysis of intact glycopeptides can reveal detailed information about glycosite, glycan structural features, and their heterogeneity. Sialyl glycopeptides can be positively, negatively, or neutrally charged depending on pH of their buffer solution and ionization conditions. To detect sialoglycopeptides, a negative-ion mode mass spectrometry may be applied with a minimal loss of sialic acids, although the positively charged or neutral glycopeptides may be excluded. Alternatively, the sialyl glycopeptides can be identified using positive-ion mode analysis by doping a high concentration of sodium salts to the analytes. Although manipulation of unmodified sialoglycopeptides can be useful for analysis of samples, less than optimal ionization, facile loss of sialyl and unfavorable ionization of accompanying non-sialyl peptides make such strategies suboptimal. Currently available chemical derivatization methods, while stabilizing for sialic acid, mask sialic acid linkage configuration. Here, we report the development of a novel approach to neutralize sialic acids via sequentially chemical modification that also reveals their linkage configuration, often an important determinant in biological function. This method utilizes several components to facilitate glycopeptide identification. These include the following: solid phase derivatization, enhanced ionization of sialoglycopeptides, differentiation of sialic acid linkage, and enrichment of the modified glycopeptides by hydrophilic interaction liquid chromatography. This technology can be used as a tool for quantitative analysis of protein sialylation in diseases with determination of sialic acid linkage configuration. Graphical Abstract ᅟ.

Indexed as

AmidesAmino Acid SequenceChromatography, LiquidEsterificationGlycopeptidesHumansHydrophobic and Hydrophilic InteractionsSialic AcidsSialoglycoproteinsSpectrometry, Mass, Electrospray IonizationTandem Mass SpectrometryAmidesGlycopeptidesSialic AcidsSialoglycoproteinsAmidationEsterificationHILICNeuAc2,3NeuAc2,6Sialoglycopeptide

Identifiers

PMID29651731
PMCPMC6744383

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.