Evidence map›Paper›PMID 29651464›Full record

ArticleScience advances2018

HEx: A heterologous expression platform for the discovery of fungal natural products.

Colin J B Harvey, Mancheng Tang, Ulrich Schlecht, Joe Horecka, Curt R Fischer, Hsiao-Ching Lin, Jian Li, Brian Naughton, James Cherry, Molly Miranda and 14 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
17.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 256 citations in OpenAlex.

  1. Article
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  6. Members of theJournal of fungi (Basel, Switzerland) · 2026
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  12. Review
  13. Scaling DNA engineering.Trends in biotechnology · 2025
    Review
  14. Logan: Planetary-Scale Genome Assembly Surveys Life's Diversity.bioRxiv : the preprint server for biology · 2025
    Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Haplotype-Phased Chromosome-Level Genome Assembly ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  20. Microbial biosynthesis of rare cannabinoids.Journal of industrial microbiology & biotechnology · 2024
    Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 5 institutions in 3 countries.

Colin J B HarveyStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0002-4719-7627
Mancheng TangDepartment of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA 90095, USA.ORCID 0000-0001-9418-3239
Ulrich SchlechtStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Joe HoreckaStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Curt R FischerStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0003-3386-9813
Hsiao-Ching LinDepartment of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA 90095, USA.
Jian LiStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0003-0219-4235
Brian NaughtonStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
James CherryStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0002-0666-8947
Molly MirandaStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Yong Fuga LiStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Angela M ChuStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0003-2214-4411
James R HennessyStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Gergana A VandovaStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Diane InglisDepartment of Genetics, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0003-3166-4638
Raeka S AiyarStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0002-3007-8963
Lars M SteinmetzStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Ronald W DavisStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0003-3123-2333
Marnix H MedemaBioinformatics Group, Wageningen University, Wageningen, Netherlands.ORCID 0000-0002-2191-2821
Elizabeth SattelyDepartment of Chemical Engineering, Stanford University, Palo Alto, CA 94304, USA.
Chaitan KhoslaStanford ChEM-H (Chemistry, Engineering and Medicine for Human Health), Stanford University, Palo Alto, CA 94304, USA.
Robert P St OngeStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.ORCID 0000-0003-1626-3107
Yi TangDepartment of Chemical and Biomolecular Engineering, University of California, Los Angeles, CA 90095, USA.ORCID 0000-0003-1597-0141
Maureen E HillenmeyerStanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304, USA.
Stanford University · USPalo Alto University · USUniversity of California, Los Angeles · USEuropean Molecular Biology Laboratory · DEWageningen University & Research · NL

Funding

Genomic and synthetic biology tools for expressing natural product gene clustersU01GM110706 · NIGMS · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, STEINMETZ, LARS M · 2014 to 2018
$10.9M
NIGMS NIH HHS U01 GM110706
6 · The paper itself

Abstract

For decades, fungi have been a source of U.S. Food and Drug Administration-approved natural products such as penicillin, cyclosporine, and the statins. Recent breakthroughs in DNA sequencing suggest that millions of fungal species exist on Earth, with each genome encoding pathways capable of generating as many as dozens of natural products. However, the majority of encoded molecules are difficult or impossible to access because the organisms are uncultivable or the genes are transcriptionally silent. To overcome this bottleneck in natural product discovery, we developed the HEx (Heterologous EXpression) synthetic biology platform for rapid, scalable expression of fungal biosynthetic genes and their encoded metabolites in

Indexed as

Gene ExpressionGenetic EngineeringBiological ProductsBiosynthetic PathwaysFermentationFungiHigh-Throughput Screening AssaysPromoter Regions, GeneticWorkflowBiological Products

Identifiers

PMID29651464
PMCPMC5895447
OpenAlexW2787607673

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.