Evidence map›Paper›PMID 29650979›Full record

ArticleScientific reports2018

Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background.

Sabitri Ghimire, Margot Van der Jeught, Jitesh Neupane, Matthias S Roost, Jasper Anckaert, Mina Popovic, Filip Van Nieuwerburgh, Pieter Mestdagh, Jo Vandesompele, Dieter Deforce and 4 more

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Sabitri GhimireGhent-Fertility and Stem Cell Team (G-FaST), Department for Reproductive Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium. sabitrighimire86@gmail.com.
Margot Van der JeughtGhent-Fertility and Stem Cell Team (G-FaST), Department for Reproductive Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium.
Jitesh NeupaneGhent-Fertility and Stem Cell Team (G-FaST), Department for Reproductive Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium.
Matthias S RoostDepartment of Anatomy and Embryology, Leiden University Medical Center, Einthovenweg 20, 2333 ZC, Leiden, The Netherlands.
Jasper AnckaertDepartment of Pediatrics and Medical Genetics, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Gent, Belgium.
Mina PopovicGhent-Fertility and Stem Cell Team (G-FaST), Department for Reproductive Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium.
Filip Van NieuwerburghLaboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, Ottergemsesteenweg 460, 9000, Ghent, Belgium.ORCID 0000-0001-8815-5485
Pieter MestdaghDepartment of Pediatrics and Medical Genetics, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Gent, Belgium.
Jo VandesompeleDepartment of Pediatrics and Medical Genetics, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Gent, Belgium.ORCID 0000-0001-6274-0184
Dieter DeforceLaboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, Ottergemsesteenweg 460, 9000, Ghent, Belgium.ORCID 0000-0002-0635-661X
Björn MentenDepartment of Pediatrics and Medical Genetics, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Gent, Belgium.
Susana Chuva de Sousa LopesGhent-Fertility and Stem Cell Team (G-FaST), Department for Reproductive Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium.ORCID 0000-0003-3866-2803
Petra De SutterGhent-Fertility and Stem Cell Team (G-FaST), Department for Reproductive Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium.
Björn HeindryckxGhent-Fertility and Stem Cell Team (G-FaST), Department for Reproductive Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium. bjorn.heindryckx@ugent.be.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mouse embryonic stem cells (mESCs) exist in a naive, primed and ground state of pluripotency. While comparative analyses of these pluripotency states have been reported, the mESCs utilized originated from various genetic backgrounds and were derived in different laboratories. mESC derivation in conventional LIF + serum culture conditions is strain dependent, with different genetic backgrounds potentially affecting subsequent stem cell characteristics. In the present study, we performed a comprehensive characterization of naive, primed and ground state mESCs originating from the same genetic background within our laboratory, by comparing their transcriptional profiles. We showed unique transcriptional profiles for naive, primed and ground state mESCs. While naive and ground state mESCs have more similar but not identical profiles, primed state mESCs show a very distinct profile. We further demonstrate that the differentiation propensity of mESCs to specific germ layers is highly dependent on their respective state of pluripotency.

Indexed as

Gene Expression Regulation, DevelopmentalTranscriptomeAnimalsCell DifferentiationEmbryo, MammalianFibroblast Growth Factor 5GATA6 Transcription FactorGene OntologyGenetic BackgroundHMGB ProteinsKeratin-18MiceMolecular Sequence AnnotationMouse Embryonic Stem CellsNanog Homeobox ProteinOctamer Transcription Factor-3Fgf5 protein, mouseFibroblast Growth Factor 5Gata6 protein, mouseGATA6 Transcription FactorHMGB ProteinsKeratin-18Nanog Homeobox ProteinNanog protein, mouseOctamer Transcription Factor-3Pou5f1 protein, mouseSox17 protein, mouseSox2 protein, mouseSOXB1 Transcription FactorsSOXF Transcription Factors

Identifiers

PMID29650979
PMCPMC5897387

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.