Evidence map›Paper›PMID 29650491›Full record

ArticleEBioMedicine2018

Fecal Microbiota Composition Drives Immune Activation in HIV-infected Individuals.

Charles Preston Neff, Owen Krueger, Kathy Xiong, Sabrina Arif, Nichole Nusbacher, Jennifer M Schneider, Annie W Cunningham, Abigail Armstrong, Sam Li, Martin D McCarter and 3 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 1 pooled it
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

  1. Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation.Frontiers in cellular and infection microbiology · 2020
    Pooled it
  2. Trial
  3. Trial
  4. Microbe on the move:Journal of bacteriology · 2026
    Review
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  20. Comparison of the urinary microbiome in men who have sex with men with and without Chlamydia trachomatis infection.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Charles Preston NeffDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Owen KruegerDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Kathy XiongDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Sabrina ArifDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Nichole NusbacherDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Jennifer M SchneiderDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Annie W CunninghamDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Abigail ArmstrongDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Sam LiDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Martin D McCarterDepartment of Surgery, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Thomas B CampbellDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Catherine A LozuponeDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA. Electronic address: Catherine.Lozupone@ucdenver.edu.
Brent E PalmerDepartment of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA. Electronic address: brent.palmer@ucdenver.edu.
University of Colorado Anschutz Medical Campus · US

Funding

Diet/gut Microbiome Interaction Influence Inflammatory Disease in HIV PatientsR01DK108366 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI CAMPBELL, THOMAS B., LOZUPONE, CATHERINE · 2015 to 2019
$3.0M
Molecular Pathogenesis of Infectious DiseasesT32AI052066 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VAN DYK, LINDA F. · 2002 to 2022
$2.3M
Factors mediating gut microbiota dysbiosis and metabolic disease in HIV patientsR01DK104047 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LOZUPONE, CATHERINE, PALMER, BRENT E · 2014 to 2018
$2.1M
HIV-associated gut microbiome affects lung immunity and pneumococcal immune responseR01HL138639 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI CAMPBELL, THOMAS B., LOZUPONE, CATHERINE · 2017 to 2020
$1.9M
NHLBI NIH HHS R01 HL138639NIAID NIH HHS T32 AI052066NIDDK NIH HHS R01 DK104047NIDDK NIH HHS R01 DK108366
6 · The paper itself

Abstract

The inflammatory properties of the enteric microbiota of Human Immunodeficiency Virus (HIV)-infected individuals are of considerable interest because of strong evidence that bacterial translocation contributes to chronic immune activation and disease progression. Altered enteric microbiota composition occurs with HIV infection but whether altered microbiota composition or increased intestinal permeability alone drives peripheral immune activation is controversial. To comprehensively assess the inflammatory properties of HIV-associated enteric microbiota and relate these to systemic immune activation, we developed methods to purify whole fecal bacterial communities (FBCs) from stool for use in in vitro immune stimulation assays with human cells. We show that the enteric microbiota of untreated HIV-infected subjects induce significantly higher levels of activated monocytes and T cells compared to seronegative subjects. FBCs from anti-retroviral therapy (ART)-treated HIV-infected individuals induced intermediate T cell activation, indicating an only partial correction of adaptive immune cell activation capacity of the microbiome with ART. In vitro activation levels correlated with activation levels and viral load in blood and were particularly high in individuals harboring specific gram-positive opportunistic pathogens. Blockade experiments implicated Tumor Necrosis Factor (TNF)-α and Toll-Like Receptor-2 (TLR2), which recognizes peptidoglycan, as strong mediators of T cell activation; This may contradict a previous focus on lipopolysaccharide as a primary mediator of chronic immune activation. These data support that increased inflammatory properties of the enteric microbiota and not increased permeability alone drives chronic inflammation in HIV.

Indexed as

MicrobiotaBacteriaColony Count, MicrobialCytokinesFecesFemaleHIV-1HIV InfectionsHomosexuality, MaleHumansInflammation MediatorsLymphocyte ActivationMalePrincipal Component AnalysisRNA, Ribosomal, 16ST-LymphocytesCytokinesInflammation MediatorsRNA, Ribosomal, 16SToll-Like ReceptorsTumor Necrosis Factor-alphaChronic inflammationFecal bacteriaHIVImmune activationMicrobiomeTLR2

Identifiers

PMID29650491
PMCPMC5952409
OpenAlexW2792954251

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.