Evidence map›Paper›PMID 29649296›Full record

ArticlePLoS pathogens2018

Host shifts result in parallel genetic changes when viruses evolve in closely related species.

Ben Longdon, Jonathan P Day, Joel M Alves, Sophia C L Smith, Thomas M Houslay, John E McGonigle, Lucia Tagliaferri, Francis M Jiggins

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  12. A New Double-Stranded RNA Mycovirus inJournal of fungi (Basel, Switzerland) · 2021
    Article
  13. Article
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  15. Article
  16. Distinct spread of DNA and RNA viruses among mammals amid prominent role of domestic species.Global ecology and biogeography : a journal of macroecology · 2020
    Article
  17. Virus evolution inProceedings. Biological sciences · 2019
    Article
  18. The phylogenomics of evolving virus virulence.Nature reviews. Genetics · 2018
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ben LongdonBiosciences, College of Life & Environmental Sciences, University of Exeter, Penryn Campus, Penryn, United Kingdom.ORCID 0000-0001-6936-1697
Jonathan P DayDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.
Joel M AlvesDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-6138-9134
Sophia C L SmithDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.
Thomas M HouslayBiosciences, College of Life & Environmental Sciences, University of Exeter, Penryn Campus, Penryn, United Kingdom.
John E McGonigleDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-8390-2867
Lucia TagliaferriDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.
Francis M JigginsDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-7470-8157
University of Cambridge · GBUniversity of Exeter · GBUniversidade do Porto · PT

Funding

Wellcome Trust
6 · The paper itself

Abstract

Host shifts, where a pathogen invades and establishes in a new host species, are a major source of emerging infectious diseases. They frequently occur between related host species and often rely on the pathogen evolving adaptations that increase their fitness in the novel host species. To investigate genetic changes in novel hosts, we experimentally evolved replicate lineages of an RNA virus (Drosophila C Virus) in 19 different species of Drosophilidae and deep sequenced the viral genomes. We found a strong pattern of parallel evolution, where viral lineages from the same host were genetically more similar to each other than to lineages from other host species. When we compared viruses that had evolved in different host species, we found that parallel genetic changes were more likely to occur if the two host species were closely related. This suggests that when a virus adapts to one host it might also become better adapted to closely related host species. This may explain in part why host shifts tend to occur between related species, and may mean that when a new pathogen appears in a given species, closely related species may become vulnerable to the new disease.

Indexed as

Biological EvolutionHost-Pathogen InteractionsHost SpecificityPhylogenyVirus Physiological PhenomenaAnimalsDrosophilidaeGenome, ViralRNA VirusesVirus Replication

Identifiers

PMID29649296
PMCPMC5897010
OpenAlexW2950604793

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.