Evidence map›Paper›PMID 29648636›Full record

ArticleJournal of experimental botany2018

The root-knot nematode Meloidogyne incognita produces a functional mimic of the Arabidopsis INFLORESCENCE DEFICIENT IN ABSCISSION signaling peptide.

Joonyup Kim, Ronghui Yang, Caren Chang, Younghoon Park, Mark L Tucker

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Root-knot nematodes produce functional mimics of tyrosine-sulfated plant peptides.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. Database mining of plant peptide homologues.Plant biotechnology (Tokyo, Japan) · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. International journal of molecular sciences · 2018
    Article
  19. Nematode-secreted peptides and host factor mimicry.Journal of experimental botany · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Joonyup KimSoybean Genomics and Improvement Laboratory, Agricultural Research Service, USDA, Beltsville, MD, USA.
Ronghui YangSoybean Genomics and Improvement Laboratory, Agricultural Research Service, USDA, Beltsville, MD, USA.
Caren ChangDepartment of Cell Biology and Molecular Genetics, Bioscience Research Bldg, University of Maryland, MD, USA.
Younghoon ParkLife and Industry Convergence Research Institute, Department of Horticulture Bioscience, Pusan National University, Miryang, Republic of Korea.
Mark L TuckerSoybean Genomics and Improvement Laboratory, Agricultural Research Service, USDA, Beltsville, MD, USA.
Agricultural Research Service · USBioscience Research · USPusan National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

INFLORESCENCE DEFICIENT IN ABSCISSION (IDA) is a signaling peptide that regulates cell separation in Arabidopsis including floral organ abscission and lateral root emergence. IDA is highly conserved in dicotyledonous flowering plant genomes. IDA-like sequences were also found in the genomic sequences of root-knot nematodes, Meloidogyne spp., which are globally deleterious pathogens of agriculturally important plants, but the role of these genes is unknown. Exogenous treatment of the Arabidopsis ida mutant with synthetic peptide identical to the M. incognita IDA-like 1 (MiIDL1) protein sequence minus its N-terminal signal peptide recovered both the abscission and root architecture defects. Constitutive expression of the full-length MiIDL1 open reading frame in the ida mutant substantially recovered the delayed floral organ abscission phenotype whereas transformants expressing a construct missing the MiIDL1 signal peptide retained the delayed abscission phenotype. Importantly, wild-type Arabidopsis plants harboring an MiIDL1-RNAi construct and infected with nematodes had approximately 40% fewer galls per root than control plants. Thus, the MiIDL1 gene produces a functional IDA mimic that appears to play a role in successful gall development on Arabidopsis roots.

Indexed as

Gene Expression Regulation, PlantAnimalsArabidopsisArabidopsis ProteinsHelminth ProteinsPlant DiseasesTylenchidaArabidopsis ProteinsHelminth ProteinsIDA protein, Arabidopsis

Identifiers

PMID29648636
PMCPMC5972575
OpenAlexW2800490053

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.