ArticleFrontiers in microbiology2018
SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments.
Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
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Who cites it
17 citing papers in PubMed.
- Virome DNA stable isotope probing reveals diverse active soil virus communities across ecosystem contexts.mSystems · 2026Article
- SIPdb: a stable isotope probing database and analytical dashboard for linking amplicon sequences to microbial activity using reverse ecology.ISME communications · 2026Article
- Long term tillage regime alters bacterial assimilation of xylose and cellulose.Applied and environmental microbiology · 2025Article
- Comparing field and lab quantitative stable isotope probing for nitrogen assimilation in soil microbes.Applied and environmental microbiology · 2025Article
- Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil.Applied and environmental microbiology · 2022Article
- Quantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks.The ISME journal · 2022Article
- Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria.The ISME journal · 2021Article
- Article
- Influence of reductive soil disinfestation or biochar amendment on bacterial communities and their utilization of plant-derived carbon in the rhizosphere of tomato.Applied microbiology and biotechnology · 2021Article
- Organic Matter Type Defines the Composition of Active Microbial Communities Originating From Anoxic Baltic Sea Sediments.Frontiers in microbiology · 2021Article
- Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design.mSystems · 2020Article
- Advances in monitoring soil microbial community dynamic and function.Journal of applied genetics · 2020Review
- Simulating metagenomic stable isotope probing datasets with MetaSIPSim.BMC bioinformatics · 2020Article
- MFEprimer-3.0: quality control for PCR primers.Nucleic acids research · 2019Article
- Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil.The ISME journal · 2019Article
- Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation.PloS one · 2019Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DNA Stable isotope probing (DNA-SIP) is a powerful method that links identity to function within microbial communities. The combination of DNA-SIP with multiplexed high throughput DNA sequencing enables simultaneous mapping of
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.