Evidence map›Paper›PMID 29643428›Full record

Observational studyScientific reports2018

Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France.

Maxime Barbier, Oana Dumitrescu, Catherine Pichat, Gérard Carret, Anne-Sophie Ronnaux-Baron, Ghislaine Blasquez, Christine Godin-Benhaim, Sandrine Boisset, Anne Carricajo, Véronique Jacomo and 9 more

Abstract readMulticenter StudyObservational Study
In one paragraph

Observational study in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Maxime BarbierInstitut de Systématique, Evolution, Biodiversité, UMR-CNRS 7205, Muséum National d'Histoire Naturelle, Université Pierre et Marie Curie, Ecole Pratique des Hautes Etudes, Sorbonne Universités, Paris, France.
Oana DumitrescuCentre International de Recherche en Infectiologie, CIRI, University of Lyon, Lyon, France.
Catherine PichatInstitut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.
Gérard CarretInstitut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.
Anne-Sophie Ronnaux-BaronComité Départemental d'Hygiène Sociale, CLAT69, Lyon, France.
Ghislaine BlasquezComité Départemental d'Hygiène Sociale, CLAT69, Lyon, France.
Christine Godin-BenhaimAgence Régionale de Santé Auvergne-Rhône-Alpes, Lyon, France.
Sandrine BoissetLaboratoire de Bactériologie, Institut de Biologie et de Pathologie, CHU de Grenoble, Grenoble, France.
Anne CarricajoLaboratoire des Agents Infectieux et d'Hygiène, CHU de Saint-Etienne, Saint-Etienne, France.
Véronique JacomoLaboratoire Biomnis, Lyon, France.
Isabelle FredenucciInstitut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.
Michèle Pérouse de MontclosInstitut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.
Charlotte GenestetCentre International de Recherche en Infectiologie, CIRI, University of Lyon, Lyon, France.
Jean-Pierre FlandroisInstitut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.
Florence AderCentre International de Recherche en Infectiologie, CIRI, University of Lyon, Lyon, France.
Philip SupplyINSERM U1019, CNRS-UMR 8204, Center for Infection and Immunity of Lille, Institut Pasteur de Lille, Université de Lille, Lille, France.
Gérard LinaCentre International de Recherche en Infectiologie, CIRI, University of Lyon, Lyon, France.ORCID 0000-0002-9236-7998
Thierry WirthInstitut de Systématique, Evolution, Biodiversité, UMR-CNRS 7205, Muséum National d'Histoire Naturelle, Université Pierre et Marie Curie, Ecole Pratique des Hautes Etudes, Sorbonne Universités, Paris, France.
Jean-Philippe RasigadeInstitut de Systématique, Evolution, Biodiversité, UMR-CNRS 7205, Muséum National d'Histoire Naturelle, Université Pierre et Marie Curie, Ecole Pratique des Hautes Etudes, Sorbonne Universités, Paris, France. jean-philippe.rasigade@univ-lyon1.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium tuberculosis (Mtb) exhibits a structured phylogeographic distribution worldwide linked with human migrations. We sought to infer how the interactions between distinct human populations shape the global population structure of Mtb on a regional scale. We applied the recently described timescaled haplotypic density (THD) technique on 638 minisatellite-based Mtb genotypes from French tuberculosis patients. THD with a long-term (200 y) timescale indicated that Mtb population in France had been mostly influenced by interactions with Eastern and Southern Europe and, to a lesser extent, Northern and Middle Africa, consistent with historical migrations favored by geographic proximity or commercial exchanges with former French colonies. Restricting the timescale to 20 y, THD identified a sustained influence of Northern Africa, but not Europe where tuberculosis incidence decreased sharply. Evolving interactions between human populations, thus, measurably influence the local population structure of Mtb. Relevant information on such interactions can be inferred using THD from Mtb genotypes.

Indexed as

Africa, NorthernCross-Sectional StudiesDatasets as TopicDNA, BacterialFranceHaplotypesHuman MigrationHumansIncidenceMinisatellite RepeatsMycobacterium tuberculosisPhylogeographyRetrospective StudiesTuberculosisDNA, Bacterial

Identifiers

PMID29643428
PMCPMC5895845

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.