Evidence map›Paper›PMID 29643369›Full record

ArticleNature communications2018

Allosteric regulation alters carrier domain translocation in pyruvate carboxylase.

Yumeng Liu, Melissa M Budelier, Katelyn Stine, Martin St Maurice

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yumeng LiuDepartment of Biological Sciences, Marquette University, Milwaukee, WI, 53201, USA.ORCID http://orcid.org/0000-0001-6581-0184
Melissa M BudelierDepartment of Biological Sciences, Marquette University, Milwaukee, WI, 53201, USA.ORCID http://orcid.org/0000-0002-1779-5757
Katelyn StineDepartment of Biological Sciences, Marquette University, Milwaukee, WI, 53201, USA.
Martin St MauriceDepartment of Biological Sciences, Marquette University, Milwaukee, WI, 53201, USA. martin.stmaurice@marquette.edu.
Marquette University · US

Funding

Investigating allosteric contributions to domain movement in pyruvate carboxylaseR15GM117540 · NIGMS · MARQUETTE UNIVERSITY · PI ST. MAURICE, MARTIN RAOUL · 2016 to 2016
$453k
NIGMS NIH HHS R15 GM117540
6 · The paper itself

Abstract

Pyruvate carboxylase (PC) catalyzes the ATP-dependent carboxylation of pyruvate to oxaloacetate. The reaction occurs in two separate catalytic domains, coupled by the long-range translocation of a biotinylated carrier domain (BCCP). Here, we use a series of hybrid PC enzymes to examine multiple BCCP translocation pathways in PC. These studies reveal that the BCCP domain of PC adopts a wide range of translocation pathways during catalysis. Furthermore, the allosteric activator, acetyl CoA, promotes one specific intermolecular carrier domain translocation pathway. These results provide a basis for the ordered thermodynamic state and the enhanced carboxyl group transfer efficiency in the presence of acetyl CoA, and reveal that the allosteric effector regulates enzyme activity by altering carrier domain movement. Given the similarities with enzymes involved in the modular synthesis of natural products, the allosteric regulation of carrier domain movements in PC is likely to be broadly applicable to multiple important enzyme systems.

Indexed as

Acetyl Coenzyme AAllosteric RegulationAllosteric SiteAmino Acid SequenceAspartic AcidAspergillus nidulansBiocatalysisCatalytic DomainCrystallography, X-RayEscherichia coliGene ExpressionKineticsModels, MolecularProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationAcetyl Coenzyme AAspartic AcidProtein SubunitsPyruvate CarboxylaseRecombinant Proteins

Identifiers

PMID29643369
PMCPMC5895798
OpenAlexW2807692324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.