Evidence map›Paper›PMID 29643180›Full record

ArticleThe Journal of biological chemistry2018

Structural control of caspase-generated glutamyl-tRNA synthetase by appended noncatalytic WHEP domains.

Dalia Halawani, Valentin Gogonea, Joseph A DiDonato, Vitaliy Pipich, Peng Yao, Arnab China, Celalettin Topbas, Kommireddy Vasu, Abul Arif, Stanley L Hazen and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Dalia HalawaniFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and.ORCID 0000-0003-4738-0656
Valentin GogoneaFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and v.gogonea@csuohio.edu.
Joseph A DiDonatoFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and.
Vitaliy Pipichthe Jülich Center for Neutron Science, Outstation at Maier-Leibnitz Zentrum, Forschungszentrum Jülich, GmbH, Lichtenbergstrasse 1, 85747 Garching, Germany, and.ORCID 0000-0002-3930-3602
Peng Yaothe Department of Medicine, Aab Cardiovascular Research Institute, University of Rochester, Rochester, New York 14642.
Arnab ChinaFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and.
Celalettin TopbasFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and.
Kommireddy VasuFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and.ORCID 0000-0002-7608-7566
Abul ArifFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and.
Stanley L HazenFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and.ORCID 0000-0001-7124-6639
Paul L FoxFrom the Department of Cellular and Molecular Medicine, Lerner Research Institute and foxp@ccf.org.
Cleveland Clinic · USCleveland State University · USForschungszentrum Jülich · DERochester Institute of Technology · US

Funding

Vascular Cell function and AtherosclerosisP01HL029582 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI FOX, PAUL L · 1985 to 2019
$32.0M
Structural Determinants Of Ceruloplasmin Inflammatory ActivityP01HL076491 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI PLOW, EDWARD FRANKLIN · 2004 to 2019
$27.3M
Mechanism of ApoA1 Lipidation by ABCA1 in HDL biogenesisR01HL128268 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI SMITH, JONATHAN D · 2016 to 2023
$3.5M
HDL Structure, Function and DysfunctionR01HL128300 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI HAZEN, STANLEY L · 2016 to 2019
$3.1M
A protein-directed RNA switch that regulates translationR01GM086430 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI FOX, PAUL L · 2009 to 2016
$2.6M
Mechanisms and Regulation of Programmed Translational ReadthroughR01GM115476 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI FOX, PAUL L · 2016 to 2019
$1.2M
CIHRNHLBI NIH HHS P01 HL029582NHLBI NIH HHS P01 HL076491NHLBI NIH HHS R01 HL128268NHLBI NIH HHS R01 HL128300NIGMS NIH HHS R01 GM086430NIGMS NIH HHS R01 GM115476
6 · The paper itself

Abstract

Aminoacyl-tRNA synthetases are ubiquitous, evolutionarily conserved enzymes catalyzing the conjugation of amino acids onto cognate tRNAs. During eukaryotic evolution, tRNA synthetases have been the targets of persistent structural modifications. These modifications can be additive, as in the evolutionary acquisition of noncatalytic domains, or subtractive, as in the generation of truncated variants through regulated mechanisms such as proteolytic processing, alternative splicing, or coding region polyadenylation. A unique variant is the human glutamyl-prolyl-tRNA synthetase (EPRS) consisting of two fused synthetases joined by a linker containing three copies of the WHEP domain (termed by its presence in tryptophanyl-, histidyl-, and glutamyl-prolyl-tRNA synthetases). Here, we identify site-selective proteolysis as a mechanism that severs the linkage between the EPRS synthetases

Indexed as

Amino Acyl-tRNA SynthetasesCaspasesCatalytic DomainGlutamate-tRNA LigaseHEK293 CellsHumansModels, MolecularProtein ConformationProtein DomainsProteolysisAmino Acyl-tRNA SynthetasesCaspasesGlutamate-tRNA Ligaseglutamyl-prolyl-tRNA synthetaseaminoacylationaminoacyl-tRNA synthetasebiophysicscaspaseEPRSglutamyl-prolyl-tRNA synthetasemicroscale thermophoresisneoepitopeneutron scatteringprotein conformationsmall-angle neutron scatteringtransfer RNA (tRNA)

Identifiers

PMID29643180
PMCPMC5995526
OpenAlexW2797614830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.