Evidence map›Paper›PMID 29642018›Full record

ArticleCell reports2018

A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence.

Camila Ferreira de Souza, Thais S Sabedot, Tathiane M Malta, Lindsay Stetson, Olena Morozova, Artem Sokolov, Peter W Laird, Maciej Wiznerowicz, Antonio Iavarone, James Snyder and 13 more

Abstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed.

  1. Review
  2. Review
  3. Chromosomal Instability Drives Glioblastoma Heterogeneity and Therapeutic Opportunities.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Camila Ferreira de SouzaDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, SP, Brazil.
Thais S SabedotDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, SP, Brazil.
Tathiane M MaltaDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, SP, Brazil.
Lindsay StetsonCase Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Olena MorozovaUC Santa Cruz Genomics Institute and Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
Artem SokolovLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Peter W LairdCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA.
Maciej WiznerowiczLaboratory for Gene Therapy, Department of Diagnostics and Cancer Immunology, Greater Poland Cancer Centre, Poznan, Poland; Department of Cancer Immunology, Poznan University of Medical Sciences, Poznan, Poland; International Institute for Molecular Oncology, Poznan, Poland.
Antonio IavaroneDepartment of Pathology and Cell Biology and Neurology Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA.
James SnyderDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA.
Ana deCarvalhoDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA.
Zachary SanbornNantOmics, LLC, Santa Cruz, CA, USA.
Kerrie L McDonaldCure Brain Cancer Biomarkers and Translational Research Laboratory, Prince of Wales Clinical School, UNSW, Sydney, NSW, Australia.
William A FriedmanDepartment of Neurosurgery, University of Florida, Gainesville, FL, USA.
Daniela TirapelliDepartment of Surgery and Anatomy, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, Brazil.
Laila PoissonDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA; Department of Public Health Sciences, Henry Ford Health System, Detroit, MI 48202, USA.
Tom MikkelsenDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA.
Carlos G CarlottiDepartment of Surgery and Anatomy, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, Brazil.
Steven KalkanisDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA.
Jean ZenklusenNational Cancer Institute, Bethesda, MD 20892, USA.
Sofie R SalamaUC Santa Cruz Genomics Institute and Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
Jill S Barnholtz-SloanCase Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Houtan NoushmehrDepartment of Neurosurgery, Henry Ford Health System, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, SP, Brazil. Electronic address: hnoushm1@hfhs.org.

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Amar Desai · 1987 to 2026
$142.3M
NCI NIH HHS HHSN261201000057CNCI NIH HHS HHSN261201000057INCI NIH HHS P30 CA043703
6 · The paper itself

Abstract

Glioma diagnosis is based on histomorphology and grading; however, such classification does not have predictive clinical outcome after glioblastomas have developed. To date, no bona fide biomarkers that significantly translate into a survival benefit to glioblastoma patients have been identified. We previously reported that the IDH mutant G-CIMP-high subtype would be a predecessor to the G-CIMP-low subtype. Here, we performed a comprehensive DNA methylation longitudinal analysis of diffuse gliomas from 77 patients (200 tumors) to enlighten the epigenome-based malignant transformation of initially lower-grade gliomas. Intra-subtype heterogeneity among G-CIMP-high primary tumors allowed us to identify predictive biomarkers for assessing the risk of malignant recurrence at early stages of disease. G-CIMP-low recurrence appeared in 9.5% of all gliomas, and these resembled IDH-wild-type primary glioblastoma. G-CIMP-low recurrence can be characterized by distinct epigenetic changes at candidate functional tissue enhancers with AP-1/SOX binding elements, mesenchymal stem cell-like epigenomic phenotype, and genomic instability. Molecular abnormalities of longitudinal G-CIMP offer possibilities to defy glioblastoma progression.

Indexed as

DNA MethylationAdultBiomarkers, TumorBrain NeoplasmsCpG IslandsFemaleGenomic InstabilityGliomaHumansIsocitrate DehydrogenaseKaplan-Meier EstimateLongitudinal StudiesMaleMiddle AgedMutationNeoplasm GradingBiomarkers, TumorIDH1 protein, humanIsocitrate DehydrogenaseDNA methylationG-CIMP-highG-CIMP-lowIDH mutationintra-subtype heterogeneitylongitudinal gliomasmalignant transformation and recurrencepredictive biomarkersstem cell-like glioblastoma

Identifiers

PMID29642018
PMCPMC8859991

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.