Evidence map›Paper›PMID 29642014›Full record

ArticleCell reports2018

A Universal Approach to Optimize the Folding and Stability of Prefusion-Closed HIV-1 Envelope Trimers.

Lucy Rutten, Yen-Ting Lai, Sven Blokland, Daphne Truan, Ilona J M Bisschop, Nika M Strokappe, Annemart Koornneef, Danielle van Manen, Gwo-Yu Chuang, S Katie Farney and 3 more

Abstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed.

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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lucy RuttenJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Yen-Ting LaiVaccine Research Center, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD 20892, USA.
Sven BloklandJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Daphne TruanJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Ilona J M BisschopJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Nika M StrokappeJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Annemart KoornneefJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Danielle van ManenJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Gwo-Yu ChuangVaccine Research Center, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD 20892, USA.
S Katie FarneyVaccine Research Center, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD 20892, USA.
Hanneke SchuitemakerJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands.
Peter D KwongVaccine Research Center, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, MD 20892, USA. Electronic address: pdkwong@nih.gov.
Johannes P M LangedijkJanssen Vaccines & Prevention, Archimedesweg 4-6, Leiden 2333, the Netherlands. Electronic address: hlangedi@its.jnj.com.

Funding

Design Of ImmunogensZIAAI005024 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ZHOU, TONGQING · 2009 to 2025
$21.5M
Rational Immunogen Design Using Computational MethodsZICAI005114 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI RAWI, REDA · 2010 to 2025
$4.3M
Computational Tools for Structural AnalysisZICAI005112 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI RAWI, REDA · 2010 to 2025
$4.1M
Design Of ImmunogensZ01AI005024 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI KWONG, PETER D · 2002 to 2008
$564k
Intramural NIH HHS Z01 AI005024Intramural NIH HHS ZIA AI005024NULL ZIA AI005024-14
6 · The paper itself

Abstract

The heavily glycosylated native-like envelope (Env) trimer of HIV-1 is expected to have low immunogenicity, whereas misfolded forms are often highly immunogenic. High-quality correctly folded Envs may therefore be critical for developing a vaccine that induces broadly neutralizing antibodies. Moreover, the high variability of Env may require immunizations with multiple Envs. Here, we report a universal strategy that provides for correctly folded Env trimers of high quality and yield through a repair-and-stabilize approach. In the repair stage, we utilized a consensus strategy that substituted rare strain-specific residues with more prevalent ones. The stabilization stage involved structure-based design and experimental assessment confirmed by crystallographic feedback. Regions important for the refolding of Env were targeted for stabilization. Notably, the α9-helix and an intersubunit β sheet proved to be critical for trimer stability. Our approach provides a means to produce prefusion-closed Env trimers from diverse HIV-1 strains, a substantial advance for vaccine development.

Indexed as

Calorimetry, Differential ScanningCrystallography, X-Rayenv Gene Products, Human Immunodeficiency VirusHIV-1HIV AntibodiesHumansHydrophobic and Hydrophilic InteractionsMutagenesis, Site-DirectedProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein MultimerizationProtein RefoldingProtein StabilityRecombinant Proteinsenv Gene Products, Human Immunodeficiency VirusHIV AntibodiesRecombinant ProteinschronicConC_baseenvelope proteinHIVhybrid sheetSOSIPstabilizationtransmitted/foundervaccineX-ray structure

Identifiers

PMID29642014
PMCPMC6010203

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.