Evidence map›Paper›PMID 29641999›Full record

ArticleCell reports2018

JMJD1B Demethylates H4R3me2s and H3K9me2 to Facilitate Gene Expression for Development of Hematopoietic Stem and Progenitor Cells.

Sihui Li, Shafat Ali, Xiaotao Duan, Songbai Liu, Juan Du, Changwei Liu, Huifang Dai, Mian Zhou, Lina Zhou, Lu Yang and 11 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 102 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. KDM4A Erases the H3R17me2a Mark, Facilitating Chromosome Condensation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  5. PARP1-mediated 5' flap dynamics facilitate Okazaki fragment maturation.bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Lysine and arginine methylation of transcription factors.Cellular and molecular life sciences : CMLS · 2024
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 2 countries.

Sihui LiCollege of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China; Departments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Shafat AliDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Xiaotao DuanState Key Laboratory of Toxicology and Medical Countermeasures, Beijing Institute of Pharmacology and Toxicology, Beijing, China.
Songbai LiuDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Juan DuDepartment of Diabetes Complications & Metabolism, Beckman Research Institute, City of Hope, Duarte, CA, USA; Department of Molecular and Cellular Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Changwei LiuDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Huifang DaiDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Mian ZhouDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Lina ZhouCollege of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China; Departments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Lu YangDepartment of Molecular and Cellular Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Peiguo ChuDepartment of Pathology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Ling LiDepartment of Hematologic Malignancy Translational Science, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Ravi BhatiaDepartment of Hematologic Malignancy Translational Science, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Dustin E SchonesDepartment of Diabetes Complications & Metabolism, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Xiwei WuDepartment of Molecular and Cellular Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Hong XuColleges of Life Sciences and Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China.
Yuejin HuaColleges of Life Sciences and Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China.
Zhigang GuoCollege of Life Sciences, Nanjing Normal University, Nanjing, Jiangsu, China.
Yanzhong YangDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Li ZhengDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA. Electronic address: lzheng@coh.org.
Binghui ShenDepartments of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, Duarte, CA, USA. Electronic address: bshen@coh.org.
Beckman Research InstituteCancer Genetics (United States) · USZhejiang University · CNCity of Hope · USCity Of Hope National Medical Center · USNanjing Normal University · CN

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI XIWEI WU · 1985 to 2026
$86.3M
Function Analysis of FEN-1 Nuclease in Genome StabilityR01CA073764 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI BINGHUI SHEN · 2002 to 2026
$7.9M
Functional Analysis of Structure Specific Nucleases in Genome Stability and CancersR50CA211397 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ZHENG, LI · 2016 to 2025
$3.3M
NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA073764NCI NIH HHS R50 CA211397
6 · The paper itself

Abstract

The arginine methylation status of histones dynamically changes during many cellular processes, including hematopoietic stem/progenitor cell (HSPC) development. The arginine methyltransferases and the readers that transduce the histone codes have been defined. However, whether arginine demethylation actively occurs in cells and what enzyme demethylates the methylarginine residues during various cellular processes are unknown. We report that JMJD1B, previously identified as a lysine demethylase for H3K9me2, mediates arginine demethylation of H4R3me2s and its intermediate, H4R3me1. We show that demethylation of H4R3me2s and H3K9me2s in promoter regions is correlated with active gene expression. Furthermore, knockout of JMJD1B blocks demethylation of H4R3me2s and/or H3K9me2 at distinct clusters of genes and impairs the activation of genes important for HSPC differentiation and development. Consequently, JMJD1B

Indexed as

AnimalsDemethylationEpigenesis, GeneticFemaleHEK293 CellsHematopoiesisHematopoietic Stem CellsHistonesHumansJumonji Domain-Containing Histone DemethylasesMaleMiceMice, Inbred C57BLMice, KnockoutPromoter Regions, GeneticProtein-Arginine N-MethyltransferasesHistonesJumonji Domain-Containing Histone DemethylasesKdm3b protein, mouseProtein-Arginine N-MethyltransferasesRNA, Small Interferingarginine demethylaseepigenetic programminggene expressionhematopoiesishistoneJMJD1BKDM3BPRMT5

Identifiers

PMID29641999
PMCPMC5933860
OpenAlexW2797045064

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.