Evidence map›Paper›PMID 29641545›Full record

ArticlePloS one2018

Effects of genetic variants in the TSPO gene on protein structure and stability.

Vladimir M Milenkovic, Stefanie Bader, Daniel Sudria-Lopez, Ramona Siebert, Caroline Brandl, Caroline Nothdurfter, Bernhard H F Weber, Rainer Rupprecht, Christian H Wetzel

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Influence of Translocator Protein (Life (Basel, Switzerland) · 2026
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  3. Review
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  6. Cholesterol-dependent enzyme activity of human TSPO1.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
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  10. Mitochondrial control of microglial phagocytosis by the translocator protein and hexokinase 2 in Alzheimer's disease.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Concentration, distribution, and influence of aging on the 18 kDa translocator protein in human brain: Implications for brain imaging studies.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2020
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Vladimir M MilenkovicDepartment of Psychiatry and Psychotherapy, Molecular Neurosciences, University of Regensburg, Regensburg, Germany.ORCID 0000-0002-6050-8071
Stefanie BaderDepartment of Psychiatry and Psychotherapy, Molecular Neurosciences, University of Regensburg, Regensburg, Germany.
Daniel Sudria-LopezDepartment of Psychiatry and Psychotherapy, Molecular Neurosciences, University of Regensburg, Regensburg, Germany.ORCID 0000-0002-7492-5183
Ramona SiebertDepartment of Psychiatry and Psychotherapy, Molecular Neurosciences, University of Regensburg, Regensburg, Germany.
Caroline BrandlInstitute of Human Genetics, University of Regensburg, Regensburg, Germany.
Caroline NothdurfterDepartment of Psychiatry and Psychotherapy, Molecular Neurosciences, University of Regensburg, Regensburg, Germany.
Bernhard H F WeberInstitute of Human Genetics, University of Regensburg, Regensburg, Germany.
Rainer RupprechtDepartment of Psychiatry and Psychotherapy, Molecular Neurosciences, University of Regensburg, Regensburg, Germany.
Christian H WetzelDepartment of Psychiatry and Psychotherapy, Molecular Neurosciences, University of Regensburg, Regensburg, Germany.ORCID 0000-0002-5762-0003
University of Regensburg · DEUniversity Hospital Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 18 kDa translocator protein (TSPO) is an evolutionary conserved cholesterol binding protein localized in the outer mitochondrial membrane. Expression of TSPO is upregulated in activated microglia in various neuroinflammatory, neurodegenerative, and neoplastic disorders. Therefore, TSPO radioligands are used as biomarkers in positron emission tomography (PET) studies. In particular, a common A147T polymorphism in the TSPO gene affects binding of several high affinity TSPO radioligands. Given the relevance of TSPO as a diagnostic biomarker in disease processes, we systematically searched for mutations in the human TSPO gene by a wide array of evolution and structure based bioinformatics tools and identified potentially deleterious missense mutations. The two most frequently observed missense mutations A147T and R162H were further analysed in structural models of human wildtype and mutant TSPO proteins. The effects of missense mutations were studied on the atomic level using molecular dynamics simulations. To analyse putative effects of A147T and R162H variants on protein stability we established primary dermal fibroblast cultures from wt and homozygous A147T and R162H donors. Stability of endogenous TSPO protein, which is abundantly expressed in fibroblasts, was studied using cycloheximide protein degradation assay. Our data show that the A147T mutation significantly alters the flexibility and stability of the mutant protein. Furthermore both A147T and R162H mutations decreased the half-life of the mutant proteins by about 25 percent, which could in part explain its effect on reduced pregnenolone production and susceptibility to neuropsychiatric disorders. The present study is the first comprehensive bioinformatic analysis of genetic variants in the TSPO gene, thereby extending the knowledge about the clinical relevance of TSPO nsSNPs.

Indexed as

Polymorphism, Single NucleotideAmino Acid SequenceHumansMolecular Dynamics SimulationMutationProtein StabilityProtein Structure, SecondaryReceptors, GABAReceptors, GABATSPO protein, human

Identifiers

PMID29641545
PMCPMC5895031
OpenAlexW2796692417

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.