Evidence map›Paper›PMID 29636503›Full record

ArticleScientific reports2018

Proteomic approach to understand the molecular physiology of symbiotic interaction between Piriformospora indica and Brassica napus.

Neeraj Shrivastava, Li Jiang, Pan Li, Archana Kumari Sharma, Xingyuan Luo, Sanling Wu, Rashmi Pandey, Qikang Gao, Binggan Lou

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Advanced breeding techniques inPlant signaling & behavior · 2026
    Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Metabolic and Proteomic Profiles Reveal the Response of the ASD-Associated Resistant Strain 6-1 ofInternational journal of environmental research and public health · 2022
    Article
  9. Article
  10. Tandem application of endophytic fungusFrontiers in plant science · 2022
    Article
  11. Review
  12. Review
  13. Understanding Host-Pathogen Interactions inPlants (Basel, Switzerland) · 2020
    Review
  14. Unraveling the complex genome of Saccharum spontaneum using Polyploid Gene Assembler.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019
    Article
  15. Inoculation WithFrontiers in microbiology · 2019
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Neeraj ShrivastavaInstitute of Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Li JiangInstitute of Insect Sciences, Zhejiang University, Hangzhou, 310058, China.
Pan LiInstitute of Insect Sciences, Zhejiang University, Hangzhou, 310058, China.
Archana Kumari SharmaCentre for Environmental Science and Technology, Central University of Punjab, Bathinda, 151001, India.
Xingyuan LuoHangzhou No. 14 High School, Hangzhou, 310006, China.
Sanling WuAnalysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, 310058, China.
Rashmi PandeyGovernment Kanya Ashram School, Aara, Jashpur, Chhattisgarh, 496331, India.
Qikang GaoInstitute of Insect Sciences, Zhejiang University, Hangzhou, 310058, China.
Binggan LouInstitute of Biotechnology, Zhejiang University, Hangzhou, 310058, China. bglou@zju.edu.cn.ORCID 0000-0002-3661-5133

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many studies have been now focused on the promising approach of fungal endophytes to protect the plant from nutrient deficiency and environmental stresses along with better development and productivity. Quantitative and qualitative protein characteristics are regulated at genomic, transcriptomic, and posttranscriptional levels. Here, we used integrated in-depth proteome analyses to characterize the relationship between endophyte Piriformospora indica and Brassica napus plant highlighting its potential involvement in symbiosis and overall growth and development of the plant. An LC-MS/MS based label-free quantitative technique was used to evaluate the differential proteomics under P. indica treatment vs. control plants. In this study, 8,123 proteins were assessed, of which 46 showed significant abundance (34 downregulated and 12 upregulated) under high confidence conditions (p-value ≤ 0.05, fold change ≥2, confidence level 95%). Mapping of identified differentially expressed proteins with bioinformatics tools such as GO and KEGG pathway analysis showed significant enrichment of gene sets involves in metabolic processes, symbiotic signaling, stress/defense responses, energy production, nutrient acquisition, biosynthesis of essential metabolites. These proteins are responsible for root's architectural modification, cell remodeling, and cellular homeostasis during the symbiotic growth phase of plant's life. We tried to enhance our knowledge that how the biological pathways modulate during symbiosis?

Indexed as

Gene Expression RegulationSignal TransductionStress, PhysiologicalSymbiosisBasidiomycotaBrassica napusChromatography, LiquidPlant RootsProteomicsTandem Mass Spectrometry

Identifiers

PMID29636503
PMCPMC5893561

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.