Evidence map›Paper›PMID 29636481›Full record

ArticleNature communications2018

A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis.

Yoshie Maeda, Mineko Konishi, Takatoshi Kiba, Yasuhito Sakuraba, Naoya Sawaki, Tomohiro Kurai, Yoshiaki Ueda, Hitoshi Sakakibara, Shuichi Yanagisawa

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
46.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 329 citations in OpenAlex.

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  7. Sentinel plants enable quantitative monitoring of bioavailable nitrate in soils and microbial environments.Proceedings of the National Academy of Sciences of the United States of America · 2026
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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yoshie MaedaBiotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
Mineko KonishiBiotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
Takatoshi KibaRIKEN Center for Sustainable Resource Science, Suehiro 1-7-22, Tsurumi, Yokohama, 230-0045, Japan.ORCID http://orcid.org/0000-0001-8651-0404
Yasuhito SakurabaBiotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
Naoya SawakiBiotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
Tomohiro KuraiBiotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
Yoshiaki UedaBiotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan.
Hitoshi SakakibaraRIKEN Center for Sustainable Resource Science, Suehiro 1-7-22, Tsurumi, Yokohama, 230-0045, Japan.ORCID http://orcid.org/0000-0001-5449-6492
Shuichi YanagisawaBiotechnology Research Center, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan. asyanagi@mail.ecc.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-3758-5933
The University of Tokyo · JPRIKEN Center for Sustainable Resource Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrate is a nutrient signal that triggers complex regulation of transcriptional networks to modulate nutrient-dependent growth and development in plants. This includes time- and nitrate concentration-dependent regulation of nitrate-related gene expression. However, the underlying mechanisms remain poorly understood. Here we identify NIGT1 transcriptional repressors as negative regulators of the Arabidopsis NRT2.1 nitrate transporter gene, and show antagonistic regulation by NLP primary transcription factors for nitrate signalling and the NLP-NIGT1 transcriptional cascade-mediated repression. This antagonistic regulation provides a resolution to the complexity of nitrate-induced transcriptional regulations. Genome-wide analysis reveals that this mechanism is applicable to NRT2.1 and other genes involved in nitrate assimilation, hormone biosynthesis and transcription. Furthermore, the PHR1 master regulator of the phosphorus-starvation response also directly promotes expression of NIGT1 family genes, leading to reductions in nitrate uptake. NIGT1 repressors thus act in two transcriptional cascades, forming a direct link between phosphorus and nitrogen nutritional regulation.

Indexed as

Gene Expression Regulation, PlantTranscription, GeneticAnion Transport ProteinsArabidopsisArabidopsis ProteinsBiological TransportGene Expression Regulation, DevelopmentalGenes, ReporterLuciferasesNitratesOryzaPhosphorusPlants, Genetically ModifiedSeedsSignal TransductionTranscription FactorsAnion Transport ProteinsArabidopsis ProteinsLuciferasesNitratesNRT2.1 protein, ArabidopsisNRT2.2 protein, ArabidopsisPhosphorusPHR1 protein, ArabidopsisTranscription Factors

Identifiers

PMID29636481
PMCPMC5893545
OpenAlexW2798260306

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.