Evidence map›Paper›PMID 29636452›Full record

ArticleNature communications2018

Species-specific host factors rather than virus-intrinsic virulence determine primate lentiviral pathogenicity.

Simone Joas, Erica H Parrish, Clement W Gnanadurai, Edina Lump, Christina M Stürzel, Nicholas F Parrish, Gerald H Learn, Ulrike Sauermann, Berit Neumann, Kerstin Mätz Rensing and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Host-Parasite Coevolution in Primates.Life (Basel, Switzerland) · 2023
    Review
  8. Review
  9. Review
  10. CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Loss of Nef-mediated CD3 down-regulation in the HIV-1 lineage increases viral infectivity and spread.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 4 countries.

Simone JoasInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Erica H ParrishDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Clement W GnanaduraiInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Edina LumpInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Christina M StürzelInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Nicholas F ParrishDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Gerald H LearnDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Ulrike SauermannGerman Primate Centre, 37077, Göttingen, Germany.
Berit NeumannGerman Primate Centre, 37077, Göttingen, Germany.
Kerstin Mätz RensingGerman Primate Centre, 37077, Göttingen, Germany.
Dietmar FuchsDivision of Biological Chemistry, Biocenter Innsbruck Medical University, Center for Chemistry and Biomedicine, A-6020, Innsbruck, Austria.
James M BillingsleyEmory Vaccine Center and Yerkes National Primate Research Center, Emory University, Atlanta, GA, 30322, USA.
Steven E BosingerEmory Vaccine Center and Yerkes National Primate Research Center, Emory University, Atlanta, GA, 30322, USA.
Guido SilvestriEmory Vaccine Center and Yerkes National Primate Research Center, Emory University, Atlanta, GA, 30322, USA.
Cristian ApetreiWA Center for Vaccine Research, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
Nicolas HuotInstitut Pasteur, Unité HIV, Inflammation and Persistence, Paris, 75015, France.
Thalia Garcia-TellezInstitut Pasteur, Unité HIV, Inflammation and Persistence, Paris, 75015, France.
Michaela Müller-TrutwinInstitut Pasteur, Unité HIV, Inflammation and Persistence, Paris, 75015, France.
Dominik HotterInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Daniel SauterInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Christiane Stahl-HennigGerman Primate Centre, 37077, Göttingen, Germany.
Beatrice H HahnDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Frank KirchhoffInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany. frank.kirchhoff@uni-ulm.de.
Universität Ulm · DEGerman Primate Center · DEEmory University · USUniversity of Pennsylvania · USInstitut Pasteur · FRHôpitaux Universitaires Henri-Mondor · FRInnsbruck Medical University · ATUniversity of Georgia · USUniversity of Pittsburgh · USVanderbilt University Medical Center · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
First-in-human study of two anti-SARS CoV-2 antibodies in health volunteersUM1AI126620 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J, RILEY, JAMES L. · 2016 to 2021
$24.5M
Viral Testing Core-Maintenance of the SPF Breeding Colonies at Yerkes National Primate Research CenterU42OD011023 · OD · EMORY UNIVERSITY · PI Matthew Ryan Gardner · 2018 to 2026
$17.5M
STUDIES OF NATURAL SIV INFECTION OF SOOTY MANGABEYSR37AI066998 · NIAID · EMORY UNIVERSITY · PI SILVESTRI, GUIDO · 2011 to 2020
$7.7M
Structural studies of HIV Capsid with host factors and Capsid-targeting antiviralsR01AI120860 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI Stefan G Sarafianos, Zhengqiang Wang · 2015 to 2026
$6.0M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
Studies of the precursor of the human AIDS virus in its natural chimpanzee hostR01AI120810 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2016 to 2020
$3.4M
Restriction of HIV-1 transmission by type 1 interferonsR01AI114266 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2014 to 2018
$3.2M
NIAID NIH HHS R01 AI114266NIAID NIH HHS R01 AI120810NIAID NIH HHS R01 AI120860NIAID NIH HHS R37 AI050529NIAID NIH HHS R37 AI066998NIAID NIH HHS UM1 AI126620NIH HHS P51 OD011132NIH HHS R01 AI 114266NIH HHS R01 AI 120860NIH HHS R37 AI50529NIH HHS R37 AI66998NIH HHS U42 OD011023
6 · The paper itself

Abstract

HIV-1 causes chronic inflammation and AIDS in humans, whereas related simian immunodeficiency viruses (SIVs) replicate efficiently in their natural hosts without causing disease. It is currently unknown to what extent virus-specific properties are responsible for these different clinical outcomes. Here, we incorporate two putative HIV-1 virulence determinants, i.e., a Vpu protein that antagonizes tetherin and blocks NF-κB activation and a Nef protein that fails to suppress T cell activation via downmodulation of CD3, into a non-pathogenic SIVagm strain and test their impact on viral replication and pathogenicity in African green monkeys. Despite sustained high-level viremia over more than 4 years, moderately increased immune activation and transcriptional signatures of inflammation, the HIV-1-like SIVagm does not cause immunodeficiency or any other disease. These data indicate that species-specific host factors rather than intrinsic viral virulence factors determine the pathogenicity of primate lentiviruses.

Indexed as

Host SpecificityAmino Acid SequenceAnimalsBone Marrow Stromal Antigen 2CD3 ComplexChlorocebus aethiopsFemaleGene Expression RegulationHIV-1Human Immunodeficiency Virus ProteinsHumansLentiviruses, PrimateLymphocyte Activationnef Gene Products, Human Immunodeficiency VirusNF-kappa BSequence AlignmentBone Marrow Stromal Antigen 2CD3 ComplexHuman Immunodeficiency Virus Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1NF-kappa BViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID29636452
PMCPMC5893559
OpenAlexW2796846661

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.